Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g02456 ATGCTTACATGCATAGCACGTCCGAAGAAACTCGGAGACGACTCACTGAGTAACGAAAACGATTCAGAATCAAACAACAATGCGAAGAGTGTAAAATCGCTGACGTGTCAGATTAAAGACATGGCGTTAAAAGCTTCAGGTGTTTACAAAAACTGTAATCCATGTGTTCCAGCGAGTCGACTCAGGAACGGTGGTTCTGAGTCGGAAACTGACTCGGAGAAATTTAGAAGAACGAGGACGTGGGGAAAGGAAATGGAAGCGAGATTGAAAGGGATCTCGAGTGGAGAAGGAACGCCGAGTTCGTCATCGTCGTCGTTTGGCGGTGGTAGTGGGAGGAGAGTGGTGGTTTTGGAGGAGGAAGAAGGGAAGGAGTGGGTGGCGCAGGTGGAGCCTGGCGTTTTGATTACTTTTGTGTCGCTTTTACGTGGCGGGAATGATCTCAAGCGTATACGGTTCAGTCGCGATATATTTAACAAATGGCAAGCTCAAAGATGGTGGGCAGAGAACTATGACAAGGTCATGGAACTTTACAATGTTCAAAGGCTTAACCGCCAAGCTTTCCCGCTTCCAACTCCAGCTAGATCTGAAGACGAGAGTTCAAAGCGTGAATCTATAGCAGACAGCCCAGTGACGCCACCACTGACCAAAGAACAACTATCACGCAATTTATACCGACCAACCGGAATGGCAATGGGATACTCATCTTCCGATTCCTTTGATCAACACTCGATGCAGTCGAAACATTATCAGTATGACTTAAATGGTATGAACTCAACGCCAAAAGTTTCAACCATTAGTGCTGCAAAGACAGATATATCGTCAATGGCTGCTTCTATAAGAAGTAGCTCTTCTAGAGAAGCTGATCGTTCTGGCGATTTATCGATGAGCAATGCTAGTGATCCGGATAGTGAGTGGGTTGAAGAGGATGAACCTGGGGTGTACATTACTATCAGATCTTTGCCAGGTGGTAAAAGGGAGATCAGAAGAGTCAGGTTCAGTCGTGAAAAATTTGGCGAGATGCATGCTAGACTATGGTGGGAAGAGAATCGCGCCAGAGTACATGAGCAATACTTGTGA 1077 0.4615 MLTCIARPKKLGDDSLSNENDSESNNNAKSVKSLTCQIKDMALKASGVYKNCNPCVPASRLRNGGSESETDSEKFRRTRTWGKEMEARLKGISSGEGTPSSSSSSFGGGSGRRVVVLEEEEGKEWVAQVEPGVLITFVSLLRGGNDLKRIRFSRDIFNKWQAQRWWAENYDKVMELYNVQRLNRQAFPLPTPARSEDESSKRESIADSPVTPPLTKEQLSRNLYRPTGMAMGYSSSDSFDQHSMQSKHYQYDLNGMNSTPKVSTISAAKTDISSMAASIRSSSSREADRSGDLSMSNASDPDSEWVEEDEPGVYITIRSLPGGKREIRRVRFSREKFGEMHARLWWEENRARVHEQYL 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g02456 358 Pfam Transcription factor regulating root and shoot growth via Pin3 303 357 IPR013591 -
Trre3g02456 358 Pfam Transcription factor regulating root and shoot growth via Pin3 123 177 IPR013591 -
Trre3g02456 358 MobiDBLite consensus disorder prediction 1 31 - -
Trre3g02456 358 Pfam Transcription factor BRX N-terminal domain 22 55 IPR027988 -
Trre3g02456 358 ProSiteProfiles BRX domain profile. 303 358 IPR013591 -
Trre3g02456 358 PANTHER PROTEIN BREVIS RADIX-LIKE 1 1 358 IPR044532 -
Trre3g02456 358 MobiDBLite consensus disorder prediction 275 307 - -
Trre3g02456 358 MobiDBLite consensus disorder prediction 188 221 - -
Trre3g02456 358 MobiDBLite consensus disorder prediction 275 301 - -
Trre3g02456 358 MobiDBLite consensus disorder prediction 94 109 - -
Trre3g02456 358 MobiDBLite consensus disorder prediction 90 110 - -
Trre3g02456 358 ProSiteProfiles BRX domain profile. 123 178 IPR013591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g02456 Trre-Chr3 23577864 23586510 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g02456 1 358 Major Intrinsic Protein MIP AT1G31880 42.932 3.07e-85 260
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g02456 - - gmx:100794109 485.337
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre3g02456 3 23577864 23586510 Trre3g02456 3 23577864 23586510 ECH