Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g02445 ATGGATAATCTTGATTTGATGCTGAGGGAAGCCGAGACGAACAGGCTGAATATCAGTGTCAGTCAAAGTGGCGATGCTGATTTCAAAACTATCACCGAAGCGATCAACAGCATTCGCAAACCAAATAGTAGGAGAGTGATCATTTCCATAGCTCCCGGTCTTTACAGGGAGAAACTTTTGATCCCCAGCACATTACCTTTCATCACATTCTTGGGGAACACGGTCAATAAACCAAAAATTACCGGAAATGCTAAAGCTTCTGACATCGGGAGTGATGGAAAACCGCTTAAGACATACAATACTGCAACTGTTGGTGTGGATGCTGCCTACTTCATTGCAATGAACATAATATTTGAGAACACAGCATCACCTCGTAAAGGATCAAGTAACGATCAAGCAGTAGCTCTTCGTCTCTCGGGAGATAAATGCGCAGTTTACAATAGTGAAGTATATGGATTTCAAGACACTCTATATGATCACAAAGGACTCCATTACTTCAAAAATTGCAAAATTCAAGGCACGGTTGATTTCATCTTCGGAGATGGAAAGTCCCTATACGAGGGCTGCACTATAAATTCCATAGCCCAAAATTCGGGCTTTGTCACAGCTCAAAAGCGCGAAGGTTTGAATGCTGACACTGGGTTTTCAATCTTAAACAGCAAAGTAGTAGGAAGTGGACAAGCTTATTTGGGAAGAGCATGGGGAAATTACTCGAGAGTAATTTTTTCCTACACCTACATGGGTAATCTGGTTCTCCCTGAAGGATGGGTCGACAGTATGGGCGACCAACACCACCATAACTTGACTGTATTCTATGCAGAATATAAGTGCAGTGGTCCGGGATCAAGCTTTGCAAGAAGACCTAGCTGGATACGGAGATTGTCGGACAAAGATGCCCAAGAATTTATCGGAGTCCAATTCATTCATGGGGATACTTGGCTTAGCCCACCATAG 954 0.4308 MDNLDLMLREAETNRLNISVSQSGDADFKTITEAINSIRKPNSRRVIISIAPGLYREKLLIPSTLPFITFLGNTVNKPKITGNAKASDIGSDGKPLKTYNTATVGVDAAYFIAMNIIFENTASPRKGSSNDQAVALRLSGDKCAVYNSEVYGFQDTLYDHKGLHYFKNCKIQGTVDFIFGDGKSLYEGCTINSIAQNSGFVTAQKREGLNADTGFSILNSKVVGSGQAYLGRAWGNYSRVIFSYTYMGNLVLPEGWVDSMGDQHHHNLTVFYAEYKCSGPGSSFARRPSWIRRLSDKDAQEFIGVQFIHGDTWLSPP 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g02445 317 SUPERFAMILY Pectin lyase-like 16 316 IPR011050 -
Trre3g02445 317 Gene3D - 16 316 IPR012334 -
Trre3g02445 317 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 11 315 - -
Trre3g02445 317 ProSitePatterns Pectinesterase signature 2. 171 180 IPR033131 -
Trre3g02445 317 FunFam Pectinesterase 13 316 - -
Trre3g02445 317 Pfam Pectinesterase 17 311 IPR000070 GO:0030599|GO:0042545
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g02445 Trre-Chr3 23466574 23470158 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g02445 18 316 Carbohydrate Esterase AT5G47500 44.000 1.63e-86 262
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g02445 K01051 - tpra:123885915 464.151