Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g02440 ATGGGAACATTATACATTGTTTTATGTGCTGGCTTTAGAGAGGATAGAGGATTAAGTTTGGAGAAACGAAAGCGCGAGGTAAAGAATGAAACAAGATGTGGGTGTGATGCAAGATTTAAAGTTCACCTAGACATTGTATCTATGCGATGGTATGTAACTCTACTTGAAATTGATCACAAGCATGACTTACTAGGTGGTACATTGTGTGGCTTACTACCAGCACATCGAAAGATGAGTCAAAGTGACATAGATGAAATTGAACGTAACCGGAAAGCGGGGATAAGGCCATACCAAGTCTACGATTCGATGGCTAATACATCTGGTGGTTTTCACAAGGTAGGATTTGTTAAAAAGGATCTGTATAACCAAATTGGTAGACAAAGGAACTACTTTAAATTTATTCTGATGCCTGTGGTGCAGTGA 423 0.3901 MGTLYIVLCAGFREDRGLSLEKRKREVKNETRCGCDARFKVHLDIVSMRWYVTLLEIDHKHDLLGGTLCGLLPAHRKMSQSDIDEIERNRKAGIRPYQVYDSMANTSGGFHKVGFVKKDLYNQIGRQRNYFKFILMPVVQ 140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g02440 140 Pfam FAR1 DNA-binding domain 9 64 IPR004330 -
Trre3g02440 140 PANTHER OS01G0519700 PROTEIN 5 129 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g02440 Trre-Chr3 23430687 23431109 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Trre3g02440 FAR1 1.3e-06 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g02440 - - tpra:123884554 184.882