Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g02439 ATGGGGAAGTATAATTTACCAAATGAAAGGAAAAAAGATTGGCTTGATGCACTTTTGATAGATAACTTTGGTAATTGCAAGAATCATCAAGAAAAGTTTAATGAGAAGAATGTGTTTTGTGTAGATTGTGGAATAAGTTTATGTAGACATGGTGAAGAATCTCATTCTCTTCATCAAAGGTTTCAAATTTACAAATATCGTTATCAAGATGTTGTCAAATATTCTGACCTACTCAAGTATATTGATTGCTCAAATATTCAGACATATATATCAAACAAAAACAAGACTGTGCATCTCAAACCTCGACCTTTATCAAAAGAAAAGAAACTAGCAATAAAACCTAAAGTTCCTAGTTTAAGCCATGAGTCTCAAATCAAGAAAACAAAAACATCAACATCTTATAATAAGCTTGGTGGAATTTGTGAAGAATGTGGCAAACATTTACAAGACAAGCGTAACCGATTTTGTTCCCTTAGATGCAAGATGTCAATTGAAAGAGTGAATTGCAGAAAGCGTCCAAGGAAAAGCACCCCTATGAGATCTCTCTAG 549 0.3297 MGKYNLPNERKKDWLDALLIDNFGNCKNHQEKFNEKNVFCVDCGISLCRHGEESHSLHQRFQIYKYRYQDVVKYSDLLKYIDCSNIQTYISNKNKTVHLKPRPLSKEKKLAIKPKVPSLSHESQIKKTKTSTSYNKLGGICEECGKHLQDKRNRFCSLRCKMSIERVNCRKRPRKSTPMRSL 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g02439 182 PANTHER PLATZ TRANSCRIPTION FACTOR FAMILY PROTEIN 9 163 - -
Trre3g02439 182 Coils Coil 179 182 - -
Trre3g02439 182 Pfam PLATZ transcription factor 65 162 IPR006734 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g02439 Trre-Chr3 23395388 23397610 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF PLATZ Trre3g02439 PLATZ 8.4e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g02439 - - mtr:25482577 222.631