LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre3g02426	ATGAATAGAGGGAGTTTAGAACCCAATCTAAAACTCACTGTTCCTTCATCTAATCAAGCTTCTTTTGCAAAATTCTTGACACAAAGTGGTACTTTTAAAGAAGGGAATTTGCTTGTTAATAAAGATGGAGTTAGAATTGTCTCTCAAAGTGAAGATGAAGCTCAACCACCAATCAAGCCAGTTAACAATCAGATAAGTTTAGCAGAGCTTGATACAATCAAAGTGGTTGGAAAAGGAAATGGAGGGATTGTTCAATTGGTGCAACACAAATGGACTAATCAATTTTTTGCATTAAAGCAAATTCAAATGACTCTTGAGGAATCTACGTGCAGGCGAATAGCGCAAGAGCTAAAAATCAATCAATCATCACAATGTCCTCATGTTGTTGTTTGCTACCAAGCAATCTATTATAATGGCACAATATCAATTATCTTAGAGTATATGGATGGAGGGTCCTTAGAGGATCTTCTTAACAAAGTTAAAACAATTCCAGAACCGTTTCTTGCTGCCATTTGTAAGCAGGTGTTGAAGGGTTTGATGTATCTTCATCATGAGAAACACATTATTCATAGGGACTTGAAACCTTCAAATATATTGATAAATCATAGAGGGGAGGTAAAGATTACTGATTTTGGTGTAAGTATAATCATGGAAACTACTTCTGGTCAAGCAAATACTTTCATCGGTACATACAACTATATGTCGCCAGAAAGAATCAAAGGAAGCGATCAAGGCTACAACTACAAAAGTGATATATGGAGCTTAGGGCTGATGTTGCTCAAGTGCGCTACTGGGCGTTTTCCATATACTCCGCCCGATAATAGTGAAGGATGGGAAAATTTGTTTCAGCTTATTGAAACCATTGTTGAAAAACCTTCACCTAGTGCTCCATCCGACGAATGTTCTCCAGAATTTTGCTCATTTATCTCAGCATGTTTGCAGAAAAATCCAAGGGACAGACCATCAACACGAAACCTATTGAGGCATCCTTTTGTGAACATGTATGATGACTTGGAGGTGGATCTTTCGGCTTATTTCTCCAATGCAGGCTCTACACTTGCAACCATATAA	1071	0.3772	MNRGSLEPNLKLTVPSSNQASFAKFLTQSGTFKEGNLLVNKDGVRIVSQSEDEAQPPIKPVNNQISLAELDTIKVVGKGNGGIVQLVQHKWTNQFFALKQIQMTLEESTCRRIAQELKINQSSQCPHVVVCYQAIYYNGTISIILEYMDGGSLEDLLNKVKTIPEPFLAAICKQVLKGLMYLHHEKHIIHRDLKPSNILINHRGEVKITDFGVSIIMETTSGQANTFIGTYNYMSPERIKGSDQGYNYKSDIWSLGLMLLKCATGRFPYTPPDNSEGWENLFQLIETIVEKPSPSAPSDECSPEFCSFISACLQKNPRDRPSTRNLLRHPFVNMYDDLEVDLSAYFSNAGSTLATI	356

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre3g02426	356	CDD	PKc_MAPKK_plant_like	68	336	-	-
	Trre3g02426	356	FunFam	Mitogen-activated protein kinase kinase 1	51	149	-	-
	Trre3g02426	356	Pfam	Protein kinase domain	72	332	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trre3g02426	356	ProSitePatterns	Protein kinases ATP-binding region signature.	76	99	IPR017441	GO:0005524
	Trre3g02426	356	Gene3D	Phosphorylase Kinase; domain 1	45	149	-	-
	Trre3g02426	356	Gene3D	Transferase(Phosphotransferase) domain 1	150	353	-	-
	Trre3g02426	356	SUPERFAMILY	Protein kinase-like (PK-like)	69	339	IPR011009	-
	Trre3g02426	356	ProSiteProfiles	Protein kinase domain profile.	70	332	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trre3g02426	356	SMART	serkin_6	70	332	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trre3g02426	356	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	188	200	IPR008271	GO:0004672\|GO:0006468
	Trre3g02426	356	PANTHER	MITOGEN-ACTIVATED KINASE KINASE KINASE	12	336	-	-
	Trre3g02426	356	FunFam	Mitogen-activated protein kinase kinase 6	151	351	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre3g02426	Trre-Chr3	23271005	23274463	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre3g02426	27	353	MAP Kinase Kinase Gene Family	AT4G26070	65.749	7.09e-165	462

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	STE_STE7	Trre3g02426		Pkinase	8.7e-69	CL0016