Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g02425 ATGGAGGAAATAAGTTCGACGGTCGCAGTGCCATTAACACTTGGGAATTTAATACAAAAGGAGTCAGTAATGACAAATCTTATGGCAAATACAGCAACAGTTTTAATATTAAATCCTGCTTCAATTGAGGGTTGTCAATCCTTTTCTGTAGGAAGTGACGACAACGACGACGCAGATATTAGTCCACAACGTAAAATATCAGTGCCTCTAGAGGTCAAGGAGAATCAAGTTGCAGCTGAAACTGTTGCAGAAATGGTTCTTGAAAGTGACAGTAATGGAAGAAATGAAGATGAATTCATGATGGCTAATGATTTTCCGCGTATACATAATCCATCCTCTCAATCTGATGTTTGTAACAAAATCGATTCTTTTAAGGAGGAGTCTGCAATTTCAAGGACTAATTTGTCAGAAATGAACACACCGAATACTGTCATGGTTGATGGTAATAACCATGACCAGTCTGTTTTGTATGAGTCCGTGAAGAACATGGCTTCTGTTGTGATGAAACATGAGAGTGAAGATGGAAGTAAATCCGATGATTCTGATTCAAAACCAATTGCTGCAGTTCATGAGATGCCAGAGAAGCAAACATGCACAACAAACTGTGATAATGCTTTGAAATTGAGTGATCCTCCTCTTTGCGGTTTCTCATCGGTTTGTGGAAGGAGAAAAGAAATGGAAGATGCTATTGTTGTTAAGCCACAACTTTTTCAAGTACCTTCAATGATGCTAATGGATGGCCATGTGAATGAAAACACAAAACAGTCACTAGCACACTTTTTTGGTGTCTTTGATGGACATGGGGGAAGTCAGGTTGCCAATTACTGCCAGGAACATCTTCATTCAGTTTTGGTTGAGGAGATAGAAGCTGCGGAATCAAGTTTACCTGAAACTAATGAAAAGAACAATTGGCAGGACCAATGGAAGAAAGTACTCACCAATTGCTTTCAAAAAGTAGATGATAAGATCGTAGGAGTTAATGCAGATAATGGTGGAAGTAACACTAATGACGGCTCTGAGTCAAGTACTGAAGAAACTCTTGCTCCCGAGTGTGCTGGATCCACTGCACTGGTTGCAATTTTGACTCAAACCCATATAATAGTTGCGAATTGCGGCGATTCAAGAGCAGTCTTATGTCGAGGAAAAGAAGCACTGCCATTGTCTACTGACCATAGACCAGATAGAGAGGATGAGCGAGAAAGGATAGAAGCTGCCGGAGGAAAGATCATACACTGGAATGGATACCGCGTTCTTGGTGTTCTGGCAGTGTCAAGGTCCATAGGTGATAGATACTTGAAACCATGGATAATTCCAGATCCAGAAGTCAACTATGTCCTTCGAGAGAAAACAGACGAGTGCCTTATTCTAGCAAGTGACGGTTTATGGGATGTCATAACAAATGAAGAAGCCTGTGAAATTGCTCGAAAGCGAATCCTTATTTGGCATAAGAAGAATGGAACCAATGTATCAACAGGACAAGTACATGGAGTTGATCCTGCAGCTCAGTATGCTGCAGATTATCTATCAAAACTTGCCCTTCAAAGGGGAAGCAAAGATAATATCTCAGTTATTGTTATAGACTTGAAGGCTCAAAGAGAGTTCAAGAGAAAGGAATAA 1617 0.4038 MEEISSTVAVPLTLGNLIQKESVMTNLMANTATVLILNPASIEGCQSFSVGSDDNDDADISPQRKISVPLEVKENQVAAETVAEMVLESDSNGRNEDEFMMANDFPRIHNPSSQSDVCNKIDSFKEESAISRTNLSEMNTPNTVMVDGNNHDQSVLYESVKNMASVVMKHESEDGSKSDDSDSKPIAAVHEMPEKQTCTTNCDNALKLSDPPLCGFSSVCGRRKEMEDAIVVKPQLFQVPSMMLMDGHVNENTKQSLAHFFGVFDGHGGSQVANYCQEHLHSVLVEEIEAAESSLPETNEKNNWQDQWKKVLTNCFQKVDDKIVGVNADNGGSNTNDGSESSTEETLAPECAGSTALVAILTQTHIIVANCGDSRAVLCRGKEALPLSTDHRPDREDERERIEAAGGKIIHWNGYRVLGVLAVSRSIGDRYLKPWIIPDPEVNYVLREKTDECLILASDGLWDVITNEEACEIARKRILIWHKKNGTNVSTGQVHGVDPAAQYAADYLSKLALQRGSKDNISVIVIDLKAQREFKRKE 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g02425 538 SMART PP2C_4 203 526 IPR001932 -
Trre3g02425 538 MobiDBLite consensus disorder prediction 327 346 - -
Trre3g02425 538 PANTHER PROTEIN PHOSPHATASE 173 528 IPR015655 GO:0004722|GO:0006470
Trre3g02425 538 MobiDBLite consensus disorder prediction 328 346 - -
Trre3g02425 538 FunFam Protein phosphatase 2C 51 207 536 - -
Trre3g02425 538 Pfam Protein phosphatase 2C 215 521 IPR001932 -
Trre3g02425 538 ProSiteProfiles PPM-type phosphatase domain profile. 213 528 IPR001932 -
Trre3g02425 538 SUPERFAMILY PP2C-like 212 529 IPR036457 -
Trre3g02425 538 ProSitePatterns PPM-type phosphatase domain signature. 260 268 IPR000222 GO:0043169
Trre3g02425 538 Gene3D - 202 538 IPR036457 -
Trre3g02425 538 CDD PP2Cc 214 528 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g02425 Trre-Chr3 23267002 23269735 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g02425 194 537 PP2C-type Phosphatase Gene Family AT4G26080 55.714 8.03e-134 394
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g02425 K14497 - gmx:100789207 580.482