Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g02422 ATGCAGCATGTTGCTGCTATGGCTTTGCTGGTTCATCTTCGCCGATCGTCTCCTTCAGCCGCCGCCGGCGCACATCCTTTTCCTTGCCGTAAGGATGGAATGGAAGCAGAGAATAATGGAAGTTATTGGAGAAGGATTTACCAGCGGTGTTTGTCAAACCTAAGTACCGTCCATAAGTCATTATTACAGGATGTTGTAGTTTGTTCAACTTTTGATACTAACAAGTATCTTGCTACCAGAGAATTACAACGAAAAAGAAGATTATTCCAATTCAAAGCTCGTTCACAAGTCAGGCTTGTATTTGTTAACAGGGAGAATGATATTATTCTTCTTGATGATGATGATCCTTGGCAATTTAGGTGGATTAACTATTTGGAACCTGATATAAAGAGAGGACATTTCACAAATGAAGAAGAGGAAAATATCATTAAACTCCATGAAATGCTTGGGAACAGTAGCTGA 462 0.3983 MQHVAAMALLVHLRRSSPSAAAGAHPFPCRKDGMEAENNGSYWRRIYQRCLSNLSTVHKSLLQDVVVCSTFDTNKYLATRELQRKRRLFQFKARSQVRLVFVNRENDIILLDDDDPWQFRWINYLEPDIKRGHFTNEEEENIIKLHEMLGNSS 153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g02422 153 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 126 153 IPR017930 -
Trre3g02422 153 SUPERFAMILY Homeodomain-like 119 152 IPR009057 -
Trre3g02422 153 PANTHER MYB DOMAIN PROTEIN 55 119 151 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g02422 Trre-Chr3 23218130 23223715 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g02422 118 151 MYB Transcription Factor Family AT4G38620 70.588 4.80e-11 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g02422 K09422 - mof:131150687 64.6994