Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g02418 ATGTGTAGGTCTGAATCAGAATACAAATTTATTGGAAAGATTGTTGAGGAAGTCACTAAGAGGACCAGCCGCACTCGTTTACATGTTGCTGATAACCCAGTTGCGCTAGAGTCGCCAGTGTTAGAAGTGGCATCTCTTCTAGGGTCCGATTCTGATAAAGCAGCCAACATGGTTGGCATTTATGGAATCGGTGGTGTGGGTAAATCAACATTGGCTCGTGCCGTGTACAACAAAATTTCTGATCAATTTGATGGTGTGTGTTTTCTTGCTGATATAAGAGCCAGTGCAGCAACTAACAATGGTCTTGTGCAACTCCAAGAAAGACTACTTTCTGAAATACTTTATGAGAAGGATATTAAAGTGGGAGATGTTTACACAGGAATTTCAATCATTAAAAAGAGGCTCCAAAGAAAAAAGGTACTTTTGGTTCTTGATGATGTTGACAAACCGAAGCAGGTACACGCACTTGCAGGGGGACAGGATTGGTTTGGCTCCGGTAGCAAGATCATAATCACAACAAGAAACAAACATTTGTTGTCTATTCATGAGTTTCTAAAGTTATATGAAGTTAAACAGTTAAATCATGAAAAATCGCTTGAGTTGTTTAATTGGCATGCCTTTAGAAACAGAAAAATTGATCCATGTTATAGCGATATTTCAAACCGTGCAGTGTCTTATGCTCATGGCCTTCCATTGGCTTTGGAGGTCATAGGTTCTCACTTGTTTACCAAAAAAATAGATGTATGGAAATCTGCATTAGATACATATGAAAGAATTCCTCATAAAGATATTTTTGAAATTCTTAAAGTTAGCTATGATGATTTGGATGAAGACGAGAAGGGTATTTTTCTTGACATCGCTTGTTTCTTCAATTCGTATGAAATGAGCTATGTCAAAGAAATATTATACCTGCATGGTTTCAAAGTGGAAAATGGCATTCAAGTTCTGACTGAAAAATCCCTCATAAAAGTTGATGGCAATGGTTGTGTGAGAATGCATGACTTAATTCAAGACATGGGCAGAGAAATCGTGAGGCGGGAATCAGCATCAGAGCCTGGCAGACGCAGTAGATTATGGTTTGATGACGACATAGTTCATGTTTTGGAAGAAAAGACGGGCACTGATACAATTGAAGTCATAATCATCAACTTATGCAATGATAAAGAAGTGAAGTGGAATGGAAAAGCCTTCAAGAAGATGAAAAACCTGAAAATTCTTATAGTTAGAAGCGCACGGTTTTCTAGGGGCCCTAAAAAACTACCAAACAGTTTGAGAGTTCTGGACTGGAGTGGATATCCATCAGATTCCTTACCAGCTGATTTTAATCCTAAGAATCTAATGATACTTAGTTTGCCTGAAAGTTGCCTTATATCGTTCAAATCGCTCAAGGTGTTTGAGTCTTTGAACTTTCTGGACTTTGAAGGCTGCAAGTTATTAACCGAGCTACCTAGCTTGTCTGGTCTACCAAATTTGGGGGCACTGTGTCTTGACAATTGCACTAATTTAATTACGATTCATAAGTCAGTCGGTTTTCTTGAAAGACTCGTGTTATTGAGTACTCAAGGATGCAACCAGCTAGAAATTTTGGTGCCCTGCATCAATCTGTCATCTCTAGAGACTCTAGATATGAGGGGTTGCTCGCGTCTCAAGAGCTTCCCTGAAGTTTTGGGAGTAATGGAGAATATAAGAGATGTTAATTTAGACCGTACTTCCATAGATAAGTTGCCATTTTCAGTTGGAAATCTTGTTGGCCTCCAACGATTGTTCTTGAGGGAATGCAAGAACCTAACTCAACTACCGGATAGTATTCGTACATTGCCTAAACTTGAGATAATAATGTTTTATGATTGTAGAGGATTTCAATTGTTTGAGGATAAAGAAAAAGTTGGTTCAAAAGTGTTTCCAAAAACCATGCTTGTTTTTAATGAAGGAAAGGGGACAATGCTTGATGTGTGTTCTCTTAACACATGTGCCAATAATGCCATAGAATTATGCGAACCTAATCAAGAAATCATCGCCAATAATGATTTCGGATTCGTGTTTAAAGGGATTTTTGAAGGGAGAGTAAATTGGTACCAGCAAGGAAACAAGAAACCATCGTTGTGTTTTTGGTTTCGAAAGAAATTCCCTCGGATAATTCTATGTTGTGCCGGAGAACCTCCAATAAATAAAGACAATATGGTATTGGATTTCAAGTTGAGTGTACTCATCAATGGCACTAAGCAATTCAGTTCTTCATGTAACTACATATTTTCTGCAGGAAGGATATCAGACCAAATACTTATGTGTGATTTAGTGTGCAAAGGGGAAAGATCATATTTAGAACATGAATGGAATAAAGTAGAGATTTTATATGAGTTCAAATACCCTATGCCATTAGGCTCTGAAAGGATAATGGCCAACCATGACAAGACCACAACAAGAAATCCAAGTTGGTCCCTCATTTATGTCTGTCAAGATATCAAAGAGGATGTCAAATTTATGTCTGAGCTTATGGAATGCAAAGAGGTTGAGAGAAGAAAGGAAACACTATTGGGTGTTCACTCTATGCTCAAGCATCATGGATTTGATTGGATTGGGTTTTGA 2586 0.3805 MCRSESEYKFIGKIVEEVTKRTSRTRLHVADNPVALESPVLEVASLLGSDSDKAANMVGIYGIGGVGKSTLARAVYNKISDQFDGVCFLADIRASAATNNGLVQLQERLLSEILYEKDIKVGDVYTGISIIKKRLQRKKVLLVLDDVDKPKQVHALAGGQDWFGSGSKIIITTRNKHLLSIHEFLKLYEVKQLNHEKSLELFNWHAFRNRKIDPCYSDISNRAVSYAHGLPLALEVIGSHLFTKKIDVWKSALDTYERIPHKDIFEILKVSYDDLDEDEKGIFLDIACFFNSYEMSYVKEILYLHGFKVENGIQVLTEKSLIKVDGNGCVRMHDLIQDMGREIVRRESASEPGRRSRLWFDDDIVHVLEEKTGTDTIEVIIINLCNDKEVKWNGKAFKKMKNLKILIVRSARFSRGPKKLPNSLRVLDWSGYPSDSLPADFNPKNLMILSLPESCLISFKSLKVFESLNFLDFEGCKLLTELPSLSGLPNLGALCLDNCTNLITIHKSVGFLERLVLLSTQGCNQLEILVPCINLSSLETLDMRGCSRLKSFPEVLGVMENIRDVNLDRTSIDKLPFSVGNLVGLQRLFLRECKNLTQLPDSIRTLPKLEIIMFYDCRGFQLFEDKEKVGSKVFPKTMLVFNEGKGTMLDVCSLNTCANNAIELCEPNQEIIANNDFGFVFKGIFEGRVNWYQQGNKKPSLCFWFRKKFPRIILCCAGEPPINKDNMVLDFKLSVLINGTKQFSSSCNYIFSAGRISDQILMCDLVCKGERSYLEHEWNKVEILYEFKYPMPLGSERIMANHDKTTTRNPSWSLIYVCQDIKEDVKFMSELMECKEVERRKETLLGVHSMLKHHGFDWIGF 861
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g02418 861 SUPERFAMILY L domain-like 379 624 - -
Trre3g02418 861 Gene3D - 192 276 IPR042197 -
Trre3g02418 861 Gene3D Ribonuclease Inhibitor 381 532 IPR032675 -
Trre3g02418 861 Gene3D Ribonuclease Inhibitor 533 635 IPR032675 -
Trre3g02418 861 Pfam NB-ARC domain 42 273 IPR002182 GO:0043531
Trre3g02418 861 SMART AAA_5 54 193 IPR003593 GO:0016887
Trre3g02418 861 PRINTS Disease resistance protein signature 533 549 - -
Trre3g02418 861 PRINTS Disease resistance protein signature 134 148 - -
Trre3g02418 861 PRINTS Disease resistance protein signature 227 241 - -
Trre3g02418 861 PRINTS Disease resistance protein signature 57 72 - -
Trre3g02418 861 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 9 632 IPR044974 GO:0006952
Trre3g02418 861 Gene3D - 17 185 IPR027417 -
Trre3g02418 861 SUPERFAMILY "Winged helix" DNA-binding domain 263 369 IPR036390 -
Trre3g02418 861 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 25 286 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g02418 Trre-Chr3 23181783 23184727 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g02418 5 628 WRKY Transcription Factor Family AT4G12020 34.884 3.23e-90 311
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g02418 - - mtr:11441658 1263.06