Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g02417 ATGGAGAATCACATGGTGAAGGAGGAAATAGTTGAGGTGATTGATGGAGAACAAGAGGAAGAAGAAAATGTTGTTTGTGGTGATGGAGAAGATGATGTTGTTTCTACCTTGACAATGGAAAGAGTTGAAGCTGCTAAGAAATTCATTGAGAATCATTATAGGTCTCAAATGAAACACATTCAAGAACGTAAGGAAAGGCGTTCAGTTCTACAAAAGGCGTTAGAATCTGCACATGTACCAGAAGAAGAACAAATCAATTTACTGAAGGATTTAGAGAGCAAGGAGACAGAGTATATGCGGTTAAAAAGACATAAAATATGTGTCGATGATTTTGACCTTCTAACCATTATTGGCAGGGGAGCCTTTGGTGAGGTAAGACTATGTCGCGAGAAGAAATCAGGTAATATATATGCCATGAAAAAGTTGAAAAAGTCCGAAATGCTCAGCCGAGGACAGGTTGAGCATGTTAGAGCCGAGAGGAATGTACTTGCAGAAGTTGCCAATGACTGCATTGTGAAACTTTATTACTCATTTCAAGATCCTGAATTCTTATATCTTATAATGGAATATTTACCTGGTGGCGATATAATGACTTTGTTAATGAGGGAAGAAACTTTAACAGAAAGTGTGGCTAGATTTTACATCGCACAAACCGTTTTGGCCATAGAGTCTATTCATAAACACAATTACATTCATCGGGATATAAAACCTGATAACCTTCTGTTAGACATAAATGGTCATATGAAACTGTCCGATTTCGGTCTTTGCAAACCACTTGACTGCTCAAATCTATCGTCTATAAATGAAAATGAAATATTGGATGATGACAACTTGAATGATACAATGGACGTTGACGGATCCTCAAACCCAAATAGCAAAAATGGTAGGCGTTGGAAAAGTCCGCTTGAACAACTTCAACATTGGCAAATGAATCGGAGGAAATTGGCATTTTCAACGGTTGGAACTCCAGACTATATTGCTCCGGAAGTGTTACTGAAAAAGGGTTATGGTGTTGAGTGTGACTGGTGGTCTCTTGGCGCTATAATGTATGAGATGCTTGTCGGTTATCCTCCGTTTTATTCTGATGATCCTGTTACAACATGCAGAAAGATTGTGCACTGGAAAAATCACTTAAAATTTCCGGACGAGGCAAGATTGACACCTGAAGCAAAAGATCTGATATGCAGGTTGCTTAGTGGTGTTCCGCATCGACTTGGTACAAGAGGAGCAACTGAAATTAAATCTCATCCGTGGTTTAGAGATGTCATATGGGACAGACTCTATGAAACCGAGGCAGCATTTAAACCACGAGTCATTGGAGAACTCGATACTCAAAATTTTATGAAATTCGATGAGGTTGAACCGCCAAAGCCACCATCTCGAACCGGATCTGGACCGATCAGAAAGATGCTCTTAACTCCACAAGATCTCAGTTTTGTTGGCTATACATATAAGAATTTTGCCGCTGTCAAGGGGAAACGCCACTCTATTGATAAGGGAAGCTTGTCACCACGATCATCAATCGACTCCACTCAGAGTGATTCTGCAATAAACTATTCCACCTGA 1566 0.3978 MENHMVKEEIVEVIDGEQEEEENVVCGDGEDDVVSTLTMERVEAAKKFIENHYRSQMKHIQERKERRSVLQKALESAHVPEEEQINLLKDLESKETEYMRLKRHKICVDDFDLLTIIGRGAFGEVRLCREKKSGNIYAMKKLKKSEMLSRGQVEHVRAERNVLAEVANDCIVKLYYSFQDPEFLYLIMEYLPGGDIMTLLMREETLTESVARFYIAQTVLAIESIHKHNYIHRDIKPDNLLLDINGHMKLSDFGLCKPLDCSNLSSINENEILDDDNLNDTMDVDGSSNPNSKNGRRWKSPLEQLQHWQMNRRKLAFSTVGTPDYIAPEVLLKKGYGVECDWWSLGAIMYEMLVGYPPFYSDDPVTTCRKIVHWKNHLKFPDEARLTPEAKDLICRLLSGVPHRLGTRGATEIKSHPWFRDVIWDRLYETEAAFKPRVIGELDTQNFMKFDEVEPPKPPSRTGSGPIRKMLLTPQDLSFVGYTYKNFAAVKGKRHSIDKGSLSPRSSIDSTQSDSAINYST 521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g02417 521 Gene3D Transferase(Phosphotransferase) domain 1 318 437 - -
Trre3g02417 521 CDD MobB_NDR_LATS-like 45 106 - -
Trre3g02417 521 CDD STKc_NDR_like 109 485 - -
Trre3g02417 521 Pfam Protein kinase domain 113 261 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre3g02417 521 Pfam Protein kinase domain 311 419 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre3g02417 521 Gene3D Transferase(Phosphotransferase) domain 1 195 262 - -
Trre3g02417 521 Gene3D Phosphorylase Kinase; domain 1 438 448 - -
Trre3g02417 521 FunFam Non-specific serine/threonine protein kinase 195 262 - -
Trre3g02417 521 SUPERFAMILY Protein kinase-like (PK-like) 93 468 IPR011009 -
Trre3g02417 521 ProSiteProfiles Protein kinase domain profile. 111 419 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre3g02417 521 ProSiteProfiles AGC-kinase C-terminal domain profile. 420 494 IPR000961 GO:0004674|GO:0005524|GO:0006468
Trre3g02417 521 MobiDBLite consensus disorder prediction 501 521 - -
Trre3g02417 521 PANTHER SERINE/THREONINE-PROTEIN KINASE 30 469 - -
Trre3g02417 521 ProSitePatterns Protein kinases ATP-binding region signature. 117 140 IPR017441 GO:0005524
Trre3g02417 521 ProSitePatterns Serine/Threonine protein kinases active-site signature. 230 242 IPR008271 GO:0004672|GO:0006468
Trre3g02417 521 Gene3D Phosphorylase Kinase; domain 1 74 194 - -
Trre3g02417 521 FunFam Non-specific serine/threonine protein kinase 318 437 - -
Trre3g02417 521 MobiDBLite consensus disorder prediction 497 521 - -
Trre3g02417 521 SMART serkin_6 111 419 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre3g02417 521 FunFam Non-specific serine/threonine protein kinase 72 194 - -
Trre3g02417 521 SMART pkinase_C_6 420 486 IPR000961 GO:0004674|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g02417 Trre-Chr3 23174196 23179584 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g02417 18 504 AGC Kinase Gene Family AT2G19400 74.297 0.0 765
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_NDR Trre3g02417 Pkinase 7.9e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g02417 K08790 - gmx:100802177 854.358