Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g02404 ATGGGTCGTGCAAGTGGAAAAGTAACCTTGAAACAGATTCAAAATGAGAAAGTTCGAAAATCAGCTTTCAGTCAGAGAAGTATGGGATTAACAAAGAAAGTGTCAGAGTTTTCTAAAAACTTTCGAGTTGAAACTTGCTTAATTGTGTACGATGGTGATGGTGATGGTGATGGTAAGCCAATGACTTGGCCACAAGACTCAAAAACTCTACAATCCATACTTACAAAATATGAGCAACAAAAGATTGAGACGACTCCAAAGGAATTTAATGTGAAGGATTATTTTGCAAATAAGAAGAATATGGTTGAAGTTGAGATTTTGAGAGTGCGTAAAAAGATCATGATGAATAAATATCCAACTTGGAGTCTATGTTTCAATAACTTGGGAAGGGAGCAACTGAAAGGTTTCATGGATATTGTAGATCTCAAGATTCAAGATTGTAATAAAAAAATCAACATGCTAAAAAATAAGCAACAAAGTGATCAAATTAGTTTAATGCAAAACATTGCTCAGAGTCAGATGCAAAGTGTGGTTCGAGAGAATGTTGCCGCGCCACAATCAAATTCAAATCAACTCGATGATCCTATGAATCCCCTTATTGATATTAGTGAGATGATAGATTTTACTGGTCTTATAGAGTGGGATGATCTAATGCCTCAAAAGAATGTTTTCTCCTCAAATTCAAGTCAAGTTGAAGTCATGCATAGCATTCCTCAGTTGCAATATGTCACTGCTCCATTGAAGCCACTTGATAATATTAGTTTGCCTCAAGTTTCATCAACAAGGCAATTTGGTGAATTTCAGAAGTTGGATGATTTAGTGAATAAATCTGATCAAGAATGTGATGCTCAACTTGTAGATTTTAATGATTTGGCAGCTAATAAACTAAATGATGGTGATAGTTGGGTTAATCCTGATGTGTTTGAAAGGAAGGATATTTCCTTTTTACATGAAATTGAACAAGAATGTGCAACTTTGGATGCCTTTCATTCCCAACCAAGATATGGATTTTAA 1014 0.3481 MGRASGKVTLKQIQNEKVRKSAFSQRSMGLTKKVSEFSKNFRVETCLIVYDGDGDGDGKPMTWPQDSKTLQSILTKYEQQKIETTPKEFNVKDYFANKKNMVEVEILRVRKKIMMNKYPTWSLCFNNLGREQLKGFMDIVDLKIQDCNKKINMLKNKQQSDQISLMQNIAQSQMQSVVRENVAAPQSNSNQLDDPMNPLIDISEMIDFTGLIEWDDLMPQKNVFSSNSSQVEVMHSIPQLQYVTAPLKPLDNISLPQVSSTRQFGEFQKLDDLVNKSDQECDAQLVDFNDLAANKLNDGDSWVNPDVFERKDISFLHEIEQECATLDAFHSQPRYGF 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g02404 337 SUPERFAMILY SRF-like 6 81 IPR036879 GO:0003677|GO:0046983
Trre3g02404 337 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 13 63 IPR002100 GO:0003677|GO:0046983
Trre3g02404 337 Gene3D - 15 101 IPR036879 GO:0003677|GO:0046983
Trre3g02404 337 ProSiteProfiles MADS-box domain profile. 3 54 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g02404 Trre-Chr3 23026501 23027514 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g02404 8 174 Type I MADS-box Gene Family AT5G58890 32.184 5.43e-16 75.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Trre3g02404 SRF-TF 5e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g02404 - - tpra:123922586 423.705