Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g02393 ATGGCTGATGCTCAACAAGAAGACTCTAAGAAACGAAAAAGAGCAGGCAAGCGTCATTCACCCATTCAAACAAGTAGATTGGAAGAAATATTCACGACGCTCGAACATCCGACCGAGATCCAGAGAAGTGAGATAGCCAAAGAACTTGGACTTCAGCCAAGACAAGTTCAGTTTTGGTTTCAAAATAGAAGGACTCAAAAAAAGTCTCAAAATGAGAAAGCAGCTCGCAATGAACTTCGTGCTGAACATGAAAGGCTTAACAAAGAGAACATCCAGATGAAGGAGCAATTGAAGAATATTCTTTGCATAACATGTGGCCGTAGATTTTGTAAGAATCATGAGATGGAACAACTTCGGCTTGAAAATGCTCGTCTCAAAGAAGAGGTAAGTTAA 393 0.402 MADAQQEDSKKRKRAGKRHSPIQTSRLEEIFTTLEHPTEIQRSEIAKELGLQPRQVQFWFQNRRTQKKSQNEKAARNELRAEHERLNKENIQMKEQLKNILCITCGRRFCKNHEMEQLRLENARLKEEVS 130
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g02393 130 PRINTS Lambda-repressor HTH signature 50 66 IPR000047 GO:0003677
Trre3g02393 130 PRINTS Lambda-repressor HTH signature 41 50 IPR000047 GO:0003677
Trre3g02393 130 Pfam Homeodomain 17 68 IPR001356 GO:0003677
Trre3g02393 130 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 10 129 IPR042160 -
Trre3g02393 130 Gene3D - 1 77 - -
Trre3g02393 130 Coils Coil 62 96 - -
Trre3g02393 130 SMART HOX_1 12 74 IPR001356 GO:0003677
Trre3g02393 130 Coils Coil 108 130 - -
Trre3g02393 130 ProSiteProfiles 'Homeobox' domain profile. 10 70 IPR001356 GO:0003677
Trre3g02393 130 SUPERFAMILY Homeodomain-like 7 73 IPR009057 -
Trre3g02393 130 CDD homeodomain 13 71 IPR001356 GO:0003677
Trre3g02393 130 ProSitePatterns 'Homeobox' domain signature. 45 68 IPR017970 GO:0000981|GO:0006355
Trre3g02393 130 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g02393 Trre-Chr3 22868317 22869940 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g02393 1 129 Homeobox Transcription Factor Family AT1G17920 40.580 1.28e-28 107
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Trre3g02393 Homeodomain 1e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g02393 K09338 - egt:105965116 131.339