Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g02392 ATGGACTTGTCAAAAAACATGGCTGATGCTCAACAAGAAGACTCTAAGAAACGAAAAAGAGCAGGCAAGCGTCATTCACCCATTCAAACAAGTAGATTGGAAGAAATATTCACGACGCTCGAACATCCGACCGAGATCCAGAGAAGTGAGATAGCCAAAGAACTTGGACTTCAGCCAAGACAAGTTCAGTTTTGGTTTCAAAATAGAAGGACTCAAAAAAAGTCTCAAAATGAGAAAGCAGCTCGCAATGAACTTCGTGCTGAACATGAAAGGCTTAACAAAGAGAACATCCAGATGAAGGAGCAATTGAAGAATATTCTTTGCATAACATGTGGCCGTAGATTTTGTAAGAATCATGAGATGGAACAACTTCGGCTTGAAAATGCTCGTCTCAAAGAAGAGGTAAGTTAA 411 0.399 MDLSKNMADAQQEDSKKRKRAGKRHSPIQTSRLEEIFTTLEHPTEIQRSEIAKELGLQPRQVQFWFQNRRTQKKSQNEKAARNELRAEHERLNKENIQMKEQLKNILCITCGRRFCKNHEMEQLRLENARLKEEVS 136
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g02392 136 Coils Coil 68 102 - -
Trre3g02392 136 MobiDBLite consensus disorder prediction 1 31 - -
Trre3g02392 136 Coils Coil 114 136 - -
Trre3g02392 136 PRINTS Lambda-repressor HTH signature 47 56 IPR000047 GO:0003677
Trre3g02392 136 PRINTS Lambda-repressor HTH signature 56 72 IPR000047 GO:0003677
Trre3g02392 136 SMART HOX_1 18 80 IPR001356 GO:0003677
Trre3g02392 136 SUPERFAMILY Homeodomain-like 13 79 IPR009057 -
Trre3g02392 136 ProSitePatterns 'Homeobox' domain signature. 51 74 IPR017970 GO:0000981|GO:0006355
Trre3g02392 136 Pfam Homeodomain 23 74 IPR001356 GO:0003677
Trre3g02392 136 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 16 135 IPR042160 -
Trre3g02392 136 Gene3D - 2 81 - -
Trre3g02392 136 ProSiteProfiles 'Homeobox' domain profile. 16 76 IPR001356 GO:0003677
Trre3g02392 136 CDD homeodomain 19 77 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g02392 Trre-Chr3 22868317 22869958 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g02392 7 135 Homeobox Transcription Factor Family AT1G17920 40.580 1.25e-28 107
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Trre3g02392 Homeodomain 1.1e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g02392 K09338 - egt:105965116 131.339