Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g02391 ATGTATTTGAGAACTCGATTCTCTGATTCAAACGAAATCAGCAACAGCAGTGGCATATGCTGCATAACTAACAATGCAGAAGCCAATTCAACTGTTACAGATAACACAATCACACCACTAAACCTTCTCTCAAACAATCTAGCTTCAATCCTAGATGTTGCAGACTTCGACTTCTTTTCTGATGCAAAGATCATCACCGGAGACCGTAGACAAGTTTCGGTGCACCGTTGTATTCTGTCGGCGAGGAGTAGTTTCTTTAAGAACCTGTTTGGTGGAACAAAAGAGAAAATGAAAATGAGGATTGATTTGAAGGAGGTTGCTAAGGATTATGATGTTGGGTTTGATGCACTTAAAGTTGTTCTGTATTATTTGTATAGTGGGAAAGTTGAACAACCTTTGTCTGCTAAAGGTGTTTGTGTTTGTGTTGATGATGATTGTTCTCATTTTGGGTGTTGGCCTGTTGTTGATTTCATGCTTCAACTTCTTTATGCTTCTTTCACTTTTGAAATATCTGAATTGATTGCTCTTTATCAGGATAATCTACTAGAAATTCTTGACAAAATTGCAATAGATGACATATTGGAGGTTCTTTCTGTATCAAATATATGTGGCAAAACATGTGATAAACTTCTAACAAGGTGCACAGAAATAATTGTTAATTCCAATGTTGATATCACTACTCTTGAAAAATCACTTCCTCAACCTATATCGAAACAAATAATGTGCAAACGAAACGAACTAGGCTTAAACATATCTGAAAACTTTAATCTTCTACACAAACATGTTAACAGAATACATAGAGCTTTAGATTCAGATGATGTAGAATTAGTGAGGTTACTTTTGAAAGAAGGACACACTACTTTAGATGAGGCTCATGCACTTCACTATGCAGTTGCATATTGTGATGTGAAGACTACTACTGAGCTTCTTGATCTTGGACTTGGTGATGTGAATCATAAAAACAATAGGGGTTATAGCGTGTTACATGTCGCTGCGACAAGAAAAGAACCGAAGATTATTGTGTCACTTCTAACAAAAGGAGCTCAACCTTCTGAACTTACTTTGGATGGTAGAAAAGCTCTTCAGATTTCGAAGCGTTGTACGAAAGCTGTGAATTATTATAAATTTACGGAGGAAGGAAATATTTCGTCGAATGATCGATTGTGTATAGAGATATTGGAGCAAGCCGAGAGACGGGAGCCTTTACTTGGGGAAGCTTCTCTTTCTCTTGCTATGGCAGGAGACGATTTGCGTATGAAATTGTTGTACCTAGAAAATCGAGTTGGACTAGCAAAACTGTTGTTTCCTATGGAAGCAAAGGTTGTGTTGGATATTACTCAAATTGATGGAACATCTGAATTTACTCCAAACTTGGGTGGTTGCCAAAGGACAACTATGGACCTAAATGAGGCACCTTTCAAAATCAAAGAGGAGCATCTAATTAGGATGAAGGCACTGTCTAGATCAGTGGAGTTGGGGAAACGCTTCTTCCCTCGTTGCTCAGAAGTGTTGAATAAGATCTTGGATACTGATGAGCTATCGCAACTTGCGTGTATGAGTAATGACAGCCCCGAAGATCGACAAGCGAAGCGAAGACGGTACGTGGAGCTTCAAGAAGTTCTTAATAAAGTATTCCATGAAGACAAAGAGGAGTATGATAGATCTGCCATTTCTTCATCATCTTCATCCACATCAATAGGAATTGCAAAGGCCTAA 1716 0.3823 MYLRTRFSDSNEISNSSGICCITNNAEANSTVTDNTITPLNLLSNNLASILDVADFDFFSDAKIITGDRRQVSVHRCILSARSSFFKNLFGGTKEKMKMRIDLKEVAKDYDVGFDALKVVLYYLYSGKVEQPLSAKGVCVCVDDDCSHFGCWPVVDFMLQLLYASFTFEISELIALYQDNLLEILDKIAIDDILEVLSVSNICGKTCDKLLTRCTEIIVNSNVDITTLEKSLPQPISKQIMCKRNELGLNISENFNLLHKHVNRIHRALDSDDVELVRLLLKEGHTTLDEAHALHYAVAYCDVKTTTELLDLGLGDVNHKNNRGYSVLHVAATRKEPKIIVSLLTKGAQPSELTLDGRKALQISKRCTKAVNYYKFTEEGNISSNDRLCIEILEQAERREPLLGEASLSLAMAGDDLRMKLLYLENRVGLAKLLFPMEAKVVLDITQIDGTSEFTPNLGGCQRTTMDLNEAPFKIKEEHLIRMKALSRSVELGKRFFPRCSEVLNKILDTDELSQLACMSNDSPEDRQAKRRRYVELQEVLNKVFHEDKEEYDRSAISSSSSSTSIGIAKA 571
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g02391 571 Pfam Ankyrin repeats (3 copies) 266 350 IPR002110 GO:0005515
Trre3g02391 571 MobiDBLite consensus disorder prediction 549 571 - -
Trre3g02391 571 Pfam BTB/POZ domain 57 132 IPR000210 GO:0005515
Trre3g02391 571 SUPERFAMILY POZ domain 52 182 IPR011333 -
Trre3g02391 571 Gene3D Potassium Channel Kv1.1; Chain A 23 219 IPR011333 -
Trre3g02391 571 ProSiteProfiles BTB domain profile. 60 133 IPR000210 GO:0005515
Trre3g02391 571 PANTHER REGULATORY PROTEIN NPR3 5 565 IPR044292 GO:0009862|GO:2000022|GO:2000031
Trre3g02391 571 SUPERFAMILY Ankyrin repeat 256 366 IPR036770 -
Trre3g02391 571 Gene3D - 220 396 IPR036770 -
Trre3g02391 571 CDD BTB_POZ_NPR_plant 41 185 - -
Trre3g02391 571 SMART ANK_2a 323 352 IPR002110 GO:0005515
Trre3g02391 571 SMART ANK_2a 260 288 IPR002110 GO:0005515
Trre3g02391 571 SMART ANK_2a 289 319 IPR002110 GO:0005515
Trre3g02391 571 SMART BTB_4 60 185 IPR000210 GO:0005515
Trre3g02391 571 MobiDBLite consensus disorder prediction 556 571 - -
Trre3g02391 571 ProSiteProfiles Ankyrin repeat profile. 323 355 IPR002110 GO:0005515
Trre3g02391 571 Pfam NPR1/NIM1 like defence protein C terminal 365 564 IPR021094 -
Trre3g02391 571 FunFam BTB/POZ domain and ankyrin repeat-containing protein NPR1 234 387 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g02391 Trre-Chr3 22835964 22838955 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Trre3g02391 NPR1_like_C 1e-81 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g02391 K14508 - gmx:100800032 764.992