Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g02389 ATGGATTCTCCAGAACCTTCTCAGAGTCTGAATCCCGGCGCTGAATCTCCTCAAGTTGAAGAATCTCCGTTTTTGAGATTTGCAAACACTCTATCTCCAATAAAGCCTGTCAAGGCCTCTCATCATGAGACACATGGATTTCTCAGACTCAATTCTCCACCTCCTGTATTCGAGTCGCCGCGTATTAGTGATCACCACCGCCGTCAAACACAATACTTGGAAATGCCTCATTTGTCCAGTGGTGAAATATCTCAAAGTGATGATTTCAAGAAATTGACTTGTCAGCAGTCATTGTCGGAGAATGATCCGAATAGTCCTCAACAATCTGTTGAGGACTATTTGGCTGATCCCATTCCTGGGGATGATCAGTTGTTGATCACTTCCCGCACACTTCTTCAGTGTGCAGGAAATGATCAACAGCATCCTCAATTGATGCCTGATCAATTGATGGTGTCAACCTCACAAGTAAATTTAGAGAATATCCCACAAGATGGCTCTGAGGCTAGTCTAAAGTATCATGGTGGCTTCCGTAGACGCTGTCTACAATTTGATGAAGCTGCTTCCATTGTTCTTGGAAGTAATAACAAGTCTCATGTGAAAATGAATGCAACTTCAAGCAACGTTACTGTGGCCGGTTCCAAGCCACTAGGCATTGGGTTGCATTTAAATAGCATTGTAAATGCAATGCCAATTTCAGGTGTGAAGAGATTATCAGATGGTTTACAGGGCGGGATACAATCCAAACCTTATATAAGTCTGCATAAAGTCGAAAGTGTGACAAGATCCTCCTCAGTTCCGTCCAGAAATGAGAGCCATCAAACTCATGCTTCAGTAGTTGCAGCAGATTCTTTCATTTCCGAGTCTCCTATCATGAAAGAATCCATCGACCTATATCCGGCAAATAAGAAGAGAGTTAGTAGCCCTGCAGTAGTTGAAAATACCGAGGAATCAAACCGTCGTAGCACATCCAAGAAAACGAAGAAAACAAGTGCTGATGATGATGCCAGTGGCCCTAAGAGTTGCAACTGTAGGAAGAGTAAATGTTTGAAACTTTATTGTGATTGTTTTGGTGCTGGACTCTTCTGTGGCGACGATTGTGCTTGCGAAAGCTGTGGTAATAGAATAGAGTTTCAGGAGACAGTTGTTGAGACAAAGCATCATATCGAATCTCGTAATCCACAGGCATTTGCTCCCAAGATTGTACTGTGTGCGGCCGATGTTCTACAAATTAATATGGAAGATGTGAATATGATAACAACACCGGCATCGGCGAGGCACAAAAGAGGTTGCAATTGCAAAAGGTCAAAGTGTACTAAAAAATATTGTGAATGTTTTCAGGCTAGCGTTGGATGCTCGAGTGGATGTCGATGTGATGGATGTTTGAATGCTTTTGGCAAGAGAGAAGATTTTGTGGCAATGGAACATGCTTCAAGCAAAGATACAGGTCTTGCACATTCGGAGTCGAATAATTCTCAAAAGAATGCATCTACTACAGGTCCTTCATCTAAAGATAATGAGTGGTTAGATCTTCCACCACCATACCAACTCTCCAATAGAAGTGGTATTCTTCGCCAATTATCGGGGGGTTCTATTCGTTGGCGTGGTAGTTCACCAATTTTTACACCAAATGCTTCCAAAGATGACGAATCAGACGGCAAGCTATTTGACATTGTAGAAGATGAAACACCCATCAAGTCTGTGAAAGCAAATTCTCCAATCCAAAAGAGAGTTTCTCCTCCACAGAATCATCTACTTGGGATTGGATCAAGCTCTTCCTCAGGTGGTTTGAAAAGTGGCAGGAAATTTATATTGCAATCTGTTCCTTCTTTTCCGCCGTTGACCCCTTGTGCTGATTCCAAAGCTATTCGCGCTGCAAATGAGGATTCGGGTAACAACGCCGATCCAAAAAGCTAG 1914 0.4263 MDSPEPSQSLNPGAESPQVEESPFLRFANTLSPIKPVKASHHETHGFLRLNSPPPVFESPRISDHHRRQTQYLEMPHLSSGEISQSDDFKKLTCQQSLSENDPNSPQQSVEDYLADPIPGDDQLLITSRTLLQCAGNDQQHPQLMPDQLMVSTSQVNLENIPQDGSEASLKYHGGFRRRCLQFDEAASIVLGSNNKSHVKMNATSSNVTVAGSKPLGIGLHLNSIVNAMPISGVKRLSDGLQGGIQSKPYISLHKVESVTRSSSVPSRNESHQTHASVVAADSFISESPIMKESIDLYPANKKRVSSPAVVENTEESNRRSTSKKTKKTSADDDASGPKSCNCRKSKCLKLYCDCFGAGLFCGDDCACESCGNRIEFQETVVETKHHIESRNPQAFAPKIVLCAADVLQINMEDVNMITTPASARHKRGCNCKRSKCTKKYCECFQASVGCSSGCRCDGCLNAFGKREDFVAMEHASSKDTGLAHSESNNSQKNASTTGPSSKDNEWLDLPPPYQLSNRSGILRQLSGGSIRWRGSSPIFTPNASKDDESDGKLFDIVEDETPIKSVKANSPIQKRVSPPQNHLLGIGSSSSSGGLKSGRKFILQSVPSFPPLTPCADSKAIRAANEDSGNNADPKS 637
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g02389 637 MobiDBLite consensus disorder prediction 571 599 - -
Trre3g02389 637 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 339 374 IPR005172 -
Trre3g02389 637 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 428 462 IPR005172 -
Trre3g02389 637 MobiDBLite consensus disorder prediction 46 68 - -
Trre3g02389 637 MobiDBLite consensus disorder prediction 478 511 - -
Trre3g02389 637 ProSiteProfiles CRC domain profile. 337 465 IPR005172 -
Trre3g02389 637 MobiDBLite consensus disorder prediction 571 637 - -
Trre3g02389 637 MobiDBLite consensus disorder prediction 306 340 - -
Trre3g02389 637 MobiDBLite consensus disorder prediction 1 16 - -
Trre3g02389 637 SMART CXC_2 425 466 IPR033467 -
Trre3g02389 637 SMART CXC_2 336 377 IPR033467 -
Trre3g02389 637 MobiDBLite consensus disorder prediction 482 504 - -
Trre3g02389 637 MobiDBLite consensus disorder prediction 1 23 - -
Trre3g02389 637 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 2 1 121 IPR044522 GO:0003700
Trre3g02389 637 MobiDBLite consensus disorder prediction 317 340 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g02389 Trre-Chr3 22827112 22829025 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g02389 172 615 CPP Transcription Factor Family AT3G22780 34.947 9.25e-64 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CPP Trre3g02389 TCR 4.6e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g02389 K21776 - gmx:547664 307.76