Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g02379 ATGTACCATATGGAAGGTGTTTTTTCTCTTCCTATAGCCGTCAGAACTGAATTTATTCATTCTCTAATGCAATCTCTTGGAGGATGTTGTTACATTTGTCTTTGGGCATATAATACAATATTACCAAATCGTTTGTCCTTCTTGGATGGTTTCTACAATGTGCTAAACAATCAAATTCCAAGTTCTTCTTTGGGAAGTGTAGCACAACAGCTTTTTAATCAATACAGAATTTTATCATTTGATGTTAATGATGACCGCATTCCTGGAATAGCTTTTAGGAATCGACGTCCATACCTCGAGTTGCAACAATTGGAACTTCTCGCACTGTCTACAACAGAAATACAAACACAATTCTATCAAGAAGCAAGGATTAAGACTGCTGTTTTCATGGGGTGCAACATAGGAGAAATTGAGCTTGGTTTCTTAAATATGTCTCAAGTTGATATTCAAACAACACTTAGTAGTTTATTTCCTGAAGATTTTTCAAGACAAACACAACAAATTATTGATCAAAATACTAATCCACCTTCATCATCTTCATCTTCAATGAGATCATTATCAACAGCAGGTAGTCCTGAATATTCATCTCTCATATTCAACAATATTCCATCTGGAACTTCTCCATCTCATTTTCCATCTGATCATATTCATACCCCCCTTGGAGGATCTATAATCCCTCCAATGAGACCTGTTTCTAACACACTACCCCTTCAACTTCAACAATTTCCTCAAATCACACCAACACAATTATTCTCTACACCACAAATTAGTCACCAAAATGATGCAATAATGAGAGCAATACAAAATGTTCTATCTACACCCCCCTCTCAGCAAAACTTGCTTTATGGAGTTCATCCAGAATCTAGTGCATTTGGAAGGTATAGAAATGATAGAAGTCCTAATATAGGGTCAAATTTTAGAAGACAAAGTTTGATGAAGAGATCATTTTCATTCTTTAGAAACTTGAATTTGATGAGATTGAGAGATCGGAGTACTCAAGCGGCACGTCCTTCGAGTAATCAACTTCATCATATGATATCCGAGCGACGCAGGCGCGAGAAGCTTAATGAGAATTTTCAAGCTCTTAGAGCATTGCTACCTCAAGGAACTAAGAAAGACAAAGCATCCATACTAATAACAGCAAAGGAGACATTGAGATCATTGATGGCTGAAATAGACAAACTTAGCAAAAGAAATAAGGAGTTGATGTTGCAACAATCGCCAGAAGCCGATAAAGAATCAACAACAAAAACGAAAGAAATTATCAAATTACCAACAAACGAAAGATTAAACGTGCAAATTTCACATTTACCAGAATTAAGTTCATCAGAAGACGAGCAAATGGTAGTGGATTTGCAAGTGAATGTGATGGGACAAATTTCTCAAGTTGATATGTTGATTAGATTATTGGAATTCTTAAATCAAGTTCAACATGTTAACTTGATTTCAATGGATGCAACAAATACAAATAATGCACAAGGGGATCATTCCATTCATCAAATTACATTCAGGCTAAGGATCACTCAGGAATGTGAATGGGACGAGGAAGCCTTCCAGGAAGCTGTGAGAAGAGTGGTTGCTGACTTGATGCATTCCCAAGTGGACTAA 1608 0.3638 MYHMEGVFSLPIAVRTEFIHSLMQSLGGCCYICLWAYNTILPNRLSFLDGFYNVLNNQIPSSSLGSVAQQLFNQYRILSFDVNDDRIPGIAFRNRRPYLELQQLELLALSTTEIQTQFYQEARIKTAVFMGCNIGEIELGFLNMSQVDIQTTLSSLFPEDFSRQTQQIIDQNTNPPSSSSSSMRSLSTAGSPEYSSLIFNNIPSGTSPSHFPSDHIHTPLGGSIIPPMRPVSNTLPLQLQQFPQITPTQLFSTPQISHQNDAIMRAIQNVLSTPPSQQNLLYGVHPESSAFGRYRNDRSPNIGSNFRRQSLMKRSFSFFRNLNLMRLRDRSTQAARPSSNQLHHMISERRRREKLNENFQALRALLPQGTKKDKASILITAKETLRSLMAEIDKLSKRNKELMLQQSPEADKESTTKTKEIIKLPTNERLNVQISHLPELSSSEDEQMVVDLQVNVMGQISQVDMLIRLLEFLNQVQHVNLISMDATNTNNAQGDHSIHQITFRLRITQECEWDEEAFQEAVRRVVADLMHSQVD 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g02379 535 Coils Coil 378 405 - -
Trre3g02379 535 CDD bHLH_AtbHLH_like 344 396 IPR045239 -
Trre3g02379 535 PANTHER TRANSCRIPTION FACTOR BHLH041-RELATED-RELATED 112 528 IPR044658 -
Trre3g02379 535 MobiDBLite consensus disorder prediction 170 189 - -
Trre3g02379 535 Coils Coil 345 365 - -
Trre3g02379 535 Pfam Helix-loop-helix DNA-binding domain 343 388 IPR011598 GO:0046983
Trre3g02379 535 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 339 388 IPR011598 GO:0046983
Trre3g02379 535 Gene3D - 338 412 IPR036638 GO:0046983
Trre3g02379 535 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 340 406 IPR036638 GO:0046983
Trre3g02379 535 SMART finulus 345 394 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g02379 Trre-Chr3 22696979 22703725 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g02379 15 531 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G56960 40.000 1.41e-98 306
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre3g02379 HLH 1.1e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g02379 - - gmx:100807098 589.341
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre3g02379 3 22696979 22703725 Trre3g02379 3 22696979 22703725 ECH