Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g02368 ATGGACTTGTCAAGAAACATGGCTGCTGCTCAACAAGAAGACTCTAAGAAACGAAAAAGAGCAGGCAAACGTCATTCTCCCATTCAAACAAGTAGATTGGAAGAAATATTCACGATGCTTGAACATCCAACCGAGATCCAAAGAAGTGAGATAGCCAAAGAACTTGGACTTGAGCCAAGACAAGTTCAGTTTTGGTTTCAAAATCGAAGGACTCAAAAAAAGTCTCAAAATGAGAAAGCAGCTCGCAATGAACTTCGTGCTGAATATGAAAGGCTTAACAAAGAGAACATCCAGATGAAGGAGCAATTGAAGAATATTCTTTGCATAACATGTGGCCGTAGATTTTGTAAGAATCATGAGATGGAACAACTTCAGCTTGAAAATGCTCGTCTCAAAGAAGAGGTAGGTTAA 411 0.3917 MDLSRNMAAAQQEDSKKRKRAGKRHSPIQTSRLEEIFTMLEHPTEIQRSEIAKELGLEPRQVQFWFQNRRTQKKSQNEKAARNELRAEYERLNKENIQMKEQLKNILCITCGRRFCKNHEMEQLQLENARLKEEVG 136
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g02368 136 Coils Coil 114 136 - -
Trre3g02368 136 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 16 134 IPR042160 -
Trre3g02368 136 ProSitePatterns 'Homeobox' domain signature. 51 74 IPR017970 GO:0000981|GO:0006355
Trre3g02368 136 MobiDBLite consensus disorder prediction 1 29 - -
Trre3g02368 136 Pfam Homeodomain 23 74 IPR001356 GO:0003677
Trre3g02368 136 SUPERFAMILY Homeodomain-like 13 78 IPR009057 -
Trre3g02368 136 SMART HOX_1 18 80 IPR001356 GO:0003677
Trre3g02368 136 PRINTS Lambda-repressor HTH signature 47 56 IPR000047 GO:0003677
Trre3g02368 136 PRINTS Lambda-repressor HTH signature 56 72 IPR000047 GO:0003677
Trre3g02368 136 Gene3D - 4 87 - -
Trre3g02368 136 ProSiteProfiles 'Homeobox' domain profile. 16 76 IPR001356 GO:0003677
Trre3g02368 136 CDD homeodomain 19 77 IPR001356 GO:0003677
Trre3g02368 136 Coils Coil 68 109 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g02368 Trre-Chr3 22390660 22392655 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g02368 4 135 Homeobox Transcription Factor Family AT1G17920 40.741 3.42e-27 103
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Trre3g02368 Homeodomain 3.7e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g02368 K09338 - rcu:8266520 127.102