Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g02364 ATGGCTGATGCTCAACAAGACCGTAACAAATCAAAAGGAGCAAGCAAACGCCATACTCCCATTCAAACAAGTAGACTGGAAGAAATATTCATGACAGTAGAACATCCGACTGCGGAACAAAGATCTGACATTGCAAAAGAGATCGGACTTCAACCAAACCAAGTGAAGTTCTGGTTTCAAAACAGACGGACACAAAAAAAGTCTAAAACGGAGAAAACGGTTCGCAATGACCTTCTTGCTGAAAATGAAAGACTGAACAATGAGAACATCCAGATGAAGGAACAATTGAAGAATATTCTTTGCACAACATGTGGACGTCGATTTTGTAAGAATCATTCGGTGGAACAACTTATGCTTGAAAATGCTCGTCTCAGAGAAGAGGTGAGTTAA 390 0.4 MADAQQDRNKSKGASKRHTPIQTSRLEEIFMTVEHPTAEQRSDIAKEIGLQPNQVKFWFQNRRTQKKSKTEKTVRNDLLAENERLNNENIQMKEQLKNILCTTCGRRFCKNHSVEQLMLENARLREEVS 129
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g02364 129 Pfam Homeodomain 17 67 IPR001356 GO:0003677
Trre3g02364 129 SUPERFAMILY Homeodomain-like 6 71 IPR009057 -
Trre3g02364 129 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 11 128 IPR042160 -
Trre3g02364 129 PRINTS Lambda-repressor HTH signature 49 65 IPR000047 GO:0003677
Trre3g02364 129 PRINTS Lambda-repressor HTH signature 40 49 IPR000047 GO:0003677
Trre3g02364 129 Gene3D - 1 82 - -
Trre3g02364 129 CDD homeodomain 12 69 IPR001356 GO:0003677
Trre3g02364 129 ProSitePatterns 'Homeobox' domain signature. 44 67 IPR017970 GO:0000981|GO:0006355
Trre3g02364 129 SMART HOX_1 11 73 IPR001356 GO:0003677
Trre3g02364 129 MobiDBLite consensus disorder prediction 1 25 - -
Trre3g02364 129 Coils Coil 75 102 - -
Trre3g02364 129 ProSiteProfiles 'Homeobox' domain profile. 9 69 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g02364 Trre-Chr3 22343142 22344856 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g02364 17 128 Homeobox Transcription Factor Family AT1G05230 44.348 3.44e-26 100
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Trre3g02364 Homeodomain 1.6e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g02364 K09338 - dct:110111543 117.857