Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g02362 ATGACAGTCGAACATCCGACTGCGGAGCAAATATCTGAAATTGCCAAAGAGATCGGACTTCAACGAAGCCAGGTGAAGTTCTGGTTTCAAAACAGACGGACACAAAAAAAGTCTAAAACGGAGAAAACGGTTCGCAATGACCTTCGTGCTGAAAATGAAAGATTGAACAATGAGAACATCCAGATGAAGGAACAATTGAAGAATATTCTTTGCACAACATGTGGACGTCGATTTTGTAAGAATCATTCGGTGGAACAACTTATGCTTGAAAATGCTCGTCTCAGAGAAGAGTTGAGTTAA 300 0.4033 MTVEHPTAEQISEIAKEIGLQRSQVKFWFQNRRTQKKSKTEKTVRNDLRAENERLNNENIQMKEQLKNILCTTCGRRFCKNHSVEQLMLENARLREELS 99
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g02362 99 ProSiteProfiles 'Homeobox' domain profile. 1 39 IPR001356 GO:0003677
Trre3g02362 99 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 3 98 IPR042160 -
Trre3g02362 99 Coils Coil 38 72 - -
Trre3g02362 99 ProSitePatterns 'Homeobox' domain signature. 14 37 IPR017970 GO:0000981|GO:0006355
Trre3g02362 99 CDD homeodomain 5 39 IPR001356 GO:0003677
Trre3g02362 99 Pfam Homeodomain 4 37 IPR001356 GO:0003677
Trre3g02362 99 SUPERFAMILY Homeodomain-like 5 47 IPR009057 -
Trre3g02362 99 Gene3D - 2 38 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g02362 Trre-Chr3 22284754 22285183 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g02362 5 98 Homeobox Transcription Factor Family AT1G05230 45.361 1.17e-21 85.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Trre3g02362 Homeodomain 8.7e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g02362 K09338 - gmx:100795075 97.0561