Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g02349 ATGGACTTGTCAAGAAACATGGCTGACGCTCAACAAGACCGTAACAAGTCAAAAGAAGCAAACAAACGTCATTCTCCCCTTCAAACAAGTAGACTGGAAGAAATATTCATGACAGTCGAACATCCGACAACGGACCAAATTTCTGACATTGCCAAAGAGATCGGACTTCAACCAAGACAGGTGAAGTTTTGGTTTCAAAACAGACGTACACAAAAAAAGTGTAAAACGGAGAAAACGGTTCGCAATGTCTTTCTTGCTGAAAATGAAAGACTGAAAAATGAGAACATCCAGATGAAGGAACAATTGAAGAATATTCTTTGCACAACATGTGGACGTCGATTTTGTAAGAATCATTCGGTGGAACAACTTATGCTTGAAAATGCTCGTCTCAGAGAAGAGGTGAGTTAA 408 0.3946 MDLSRNMADAQQDRNKSKEANKRHSPLQTSRLEEIFMTVEHPTTDQISDIAKEIGLQPRQVKFWFQNRRTQKKCKTEKTVRNVFLAENERLKNENIQMKEQLKNILCTTCGRRFCKNHSVEQLMLENARLREEVS 135
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g02349 135 Pfam Homeodomain 23 73 IPR001356 GO:0003677
Trre3g02349 135 SUPERFAMILY Homeodomain-like 12 74 IPR009057 -
Trre3g02349 135 SMART HOX_1 17 79 IPR001356 GO:0003677
Trre3g02349 135 Gene3D - 3 82 - -
Trre3g02349 135 CDD homeodomain 23 73 IPR001356 GO:0003677
Trre3g02349 135 ProSiteProfiles 'Homeobox' domain profile. 15 75 IPR001356 GO:0003677
Trre3g02349 135 MobiDBLite consensus disorder prediction 7 29 - -
Trre3g02349 135 Coils Coil 120 135 - -
Trre3g02349 135 Coils Coil 81 108 - -
Trre3g02349 135 ProSitePatterns 'Homeobox' domain signature. 50 73 IPR017970 GO:0000981|GO:0006355
Trre3g02349 135 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 16 134 IPR042160 -
Trre3g02349 135 MobiDBLite consensus disorder prediction 1 30 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g02349 Trre-Chr3 22156597 22158377 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g02349 23 134 Homeobox Transcription Factor Family AT1G17920 41.739 9.17e-25 96.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Trre3g02349 Homeodomain 7.4e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g02349 K09338 - rcu:8266520 117.472