Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g02337 ATGTCTTTTGATCTTAATAATGAATTAGATCACCATCTCTTCAATTCAAATATTCATCAACCCTCTTCTTCATATTCCATACTCTTCAACCAAAATCAAGATCAAGGTAGATCTTATTCTTTGGAATCAAACCACATACAAAGTGATCATCTAGAGGTTGAGAAGTTATTTTCTTCTAATGGATCATGGGATAATCAAGAAATGAAGAAAGAAGATGAGAATGAAGATTATAAAGCTGAGGACAATACTTCATTGAAATGGATGCCATCAAAGAAGAGAATTATTCATAAAATGATGGAAGATCAAAGGAGTTTTAAGAACAAGTTTGAAAAAGAAAAGCTATTAGGATATGATGATAATAGTAGCAACAACAATTCTTCAAACAATAACATCACTATTAGGGTTTGTAGTGATTGCCACACAACTAAGACCCCTCTCTGGAGAAGTGGACCAACAGGTCCTAAGTCACTATGCAATGCATGCGGTATTCGACAAAGGAAAGCGCGACGCGCCCTTGCAGCGGCAGCATCTGCAAATGGTGAAACTCATGTAGAGGCTGAGAAACCTAATGTGATGGCAAAGAAGCTACAAATCAAAAGGAGAAGGTCAAAAATTGATCAATGTGCACCACAGTTAAAAAGCAAGGGTAAAATTGGAAATAAATTTTTAACTTTTGAAGATTTGATAGCAAGTTTGAGTAACAACTTGGCTGATCCTCATCAAGTTTTCCCTCAAGATGAGAAAGAGGCTGCAATTCTACTCATGGCTTTATCTTGTGGCTTACTTCATGGATTTCCTTCTAATGGTTACTTAGATTAA 819 0.3578 MSFDLNNELDHHLFNSNIHQPSSSYSILFNQNQDQGRSYSLESNHIQSDHLEVEKLFSSNGSWDNQEMKKEDENEDYKAEDNTSLKWMPSKKRIIHKMMEDQRSFKNKFEKEKLLGYDDNSSNNNSSNNNITIRVCSDCHTTKTPLWRSGPTGPKSLCNACGIRQRKARRALAAAASANGETHVEAEKPNVMAKKLQIKRRRSKIDQCAPQLKSKGKIGNKFLTFEDLIASLSNNLADPHQVFPQDEKEAAILLMALSCGLLHGFPSNGYLD 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g02337 272 CDD ZnF_GATA 135 163 IPR000679 GO:0006355|GO:0043565
Trre3g02337 272 MobiDBLite consensus disorder prediction 65 81 - -
Trre3g02337 272 FunFam GATA transcription factor 21 130 209 - -
Trre3g02337 272 Pfam GATA zinc finger 136 169 IPR000679 GO:0006355|GO:0043565
Trre3g02337 272 ProSitePatterns GATA-type zinc finger domain. 136 161 IPR000679 GO:0006355|GO:0043565
Trre3g02337 272 Gene3D - 132 208 IPR013088 GO:0006355|GO:0008270
Trre3g02337 272 ProSiteProfiles GATA-type zinc finger domain profile. 134 166 IPR000679 GO:0006355|GO:0043565
Trre3g02337 272 PANTHER GATA TRANSCRIPTION FACTOR 22-RELATED 11 264 - -
Trre3g02337 272 SMART GATA_3 130 181 IPR000679 GO:0006355|GO:0043565
Trre3g02337 272 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 132 170 - -
Trre3g02337 272 MobiDBLite consensus disorder prediction 62 81 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g02337 Trre-Chr3 21722346 21724183 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g02337 84 264 C2C2-Gata Transcription Factor Family AT4G26150 42.523 9.13e-31 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Trre3g02337 GATA 4.4e-17 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g02337 - - psat:127136613 350.517
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g05206 15 61529055 61530661 Trre3g02337 3 21722346 21724183 PCT