Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g02333 ATGGATGATGATCATCACAAATCTTTCACGTTGGATCTTAATCTTGGACTTGGATTAGGATCTTATGTGCAAGAGAATGTGAACAAATCATTGGCTATTTCAAAAGATGAATTAACCATTGGTTTGAATCATGATAAGGCAAATGAATTGAGTTTGAAAAGAGTGCATGAAGAACAAGAAGCACACACAATTGATGAAGAAATTGCTATTGACACCACCAATGATAATAACGGGTGTACAAAGAAATTGAGGCTTACTAAGGAGCAATCAACCATGCTTGAGGATGCCTTCAAGCTTCATAACACCATTAACACCGCTCAAAAACGGGCACTTGCTGAGAAATTGAATTTAAAGCAAAGACAGGTTGAAGTTTGGTTCCAGAACAGAAGAGCAAGGACTAAGCTGAAACAAACAGAGGTAAACTACATGTTCTTGAAGAAATGTCATGATAAACTAAGTGAAGAGAATCTTATCTTGAAGAAAGAATTAGAAGAATTGCGTGCATTAAAAGTTGGACCATCAAATATTACTCAATCAAACAAAGCTGCAAATTGGACCATTTGTTCATCATGCAAGAAAATATGGAAGCCAAATGAAGGACACAACAATGAAGATGATGATGATGTGGTTAGAAAGAGCAGCTATAGCACCATAGAGATAGATTAG 666 0.3604 MDDDHHKSFTLDLNLGLGLGSYVQENVNKSLAISKDELTIGLNHDKANELSLKRVHEEQEAHTIDEEIAIDTTNDNNGCTKKLRLTKEQSTMLEDAFKLHNTINTAQKRALAEKLNLKQRQVEVWFQNRRARTKLKQTEVNYMFLKKCHDKLSEENLILKKELEELRALKVGPSNITQSNKAANWTICSSCKKIWKPNEGHNNEDDDDVVRKSSYSTIEID 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g02333 221 Coils Coil 149 169 - -
Trre3g02333 221 SMART halz 136 179 IPR003106 GO:0006355|GO:0043565
Trre3g02333 221 SUPERFAMILY Homeodomain-like 73 137 IPR009057 -
Trre3g02333 221 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 46 199 - -
Trre3g02333 221 SMART HOX_1 78 140 IPR001356 GO:0003677
Trre3g02333 221 CDD homeodomain 81 137 IPR001356 GO:0003677
Trre3g02333 221 Gene3D - 86 133 - -
Trre3g02333 221 Pfam Homeodomain 82 134 IPR001356 GO:0003677
Trre3g02333 221 ProSitePatterns 'Homeobox' domain signature. 111 134 IPR017970 GO:0000981|GO:0006355
Trre3g02333 221 ProSiteProfiles 'Homeobox' domain profile. 76 136 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g02333 Trre-Chr3 21645361 21647193 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g02333 79 204 Homeobox Transcription Factor Family AT4G17460 56.349 2.75e-43 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Trre3g02333 Homeodomain 1.3e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g02333 K09338 - gmx:100790522 180.644
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g05215 15 61583522 61584996 Trre3g02333 3 21645361 21647193 PCT