Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g02319 ATGAGTTTTCTGAACGGTTCTTCACCTCGCCGGACTCCGCCGCCGGAGAATACTGATATTGAAGCGGGTCCGTTGTCTCGCCGTTCTTCTGACGTTCATGACGACGGTAATTCTTCCGATCCGTTTGATATTGCTAGAACAAAGCACGCTTCTATTGATCGACTTCGCCGCTGGAGACAAGCGGCACTTGTGCTGAATGCTTCCCGTCGATTTCGTTATACCTTGGACTTGAAGAAAGAAGAAGAGAAGAAGCAAACACTGAGAAAGATTAGAGCGCATGCACAAGCCATTAGAGCAGCATATCTTTTCAAAGCAGCTGGGGGGCAAGCGCAAGGACATGGGCAAGGGCAAGGGAATGAAGCTATAAAACCCCCTTCAACCTCTACTGGTGAATTTCCAATTGGACCAGAGCAACTTGCTTCGATTTCAAGGGAGCATGATACTGCTTCTTTGCAGCAATATGGAGGGGTTGCAGGGGTATCAAATTTACTGAAAACCGATTTAGAGAAGGGAATTAGTGGTGATGATGCTGACTTGCTAAGACGGAGGAATGCGTTTGGTTCCAACAATTACCCTCGAAAGAAAGGAAGAAGTTTTGTGATGTTTCTGTGGGATGCTTGCAAGGACCTGACCTTGGTTATTTTAATGGTAGCTGCAGCTGCTTCATTGGCACTGGGGATAAAATCTGAGGGTATTAAGGAAGGGTGGTATGATGGGGGCAGCATTGCTTTTGCGGTTGTTCTTGTTATTGTTGTTACAGCTGTAAGTGATTATAAGCAGTCTCTTCAGTTTCGAGACCTAAATGAAGAGAAGAGAAATATACACCTGGAGGTTGTTAGAGGTGGTAGAAGGGTTGAGATCTCAATATACGACCTTGTTGTTGGGGATGTTATACCTCTTAATATTGGTAACCAGGTCCCTGCTGATGGAATTGTGATCACTGGTCACTCTCTTTCAATTGATGAATCAAGCATGACAGGGGAGAGCAAAATTGTCCATAAGGATTCCAAGGATCCCTTTATGATGTCTGGTTGTAAGGTTGCAGATGGCAGTGGCACTATGCTGGTAACGGGTGTTGGAATTAATACTGAGTGGGGCCTTCTAATGGCTAGCATTTCAGAAGATACTGGTGAAGAAACACCTTTGCAGGTCCGCTTGAATGGCGTAGCCACCTTCATTGGTATAGTTGGACTCACTGTTGCTGTTGTTGTCCTGATTGTGCTACTAGCCAGATATTTCTCCGGGCATACGAAGAATGCTGATGGGTCAAAACAATTTACAGCAGGCAGGACTAAAGTTGGGGATGCTGTTGATGGAGCAATTAAGATAATAACTGTTGCGGTCACCATTGTAGTTGTTGCAGTTCCCGAGGGGCTTCCACTTGCAGTCACTTTAACACTGGCCTACTCGATGAGAAAAATGATGGCAGATAAAGCTTTGGTGAGGAGGCTTTCTGCCTGTGAGACAATGGGCTCTGCTACAACCATATGCAGTGATAAGACTGGCACGTTGACTATGAATCAGATGACTGTGGTTGAGGTTTATGCCGGGGGAAGTAAGATTAATCCTCCTCACCAGTTGGAGAGCTCTCCTAAGCTACGGTCTCTACTCATTGAAGGTGTTGCACAAAACACTAATGGCAGTGTTTTTGTCCCTGAGGGTGCTAATGATGTCGAGGTTTCTGGATCACCAACAGAAAAGGCAATTTTACATTGGGGAATTAAGGTTGGGATGAATTTTGCGACTGATCGGTCAGAATCATCAATTATACATGTCTTTCCATTTAACTCCGAGAAAAAAAGAGGCGGAGTTGCAATACAGACGACTGATTCCGATGTTCATATACATTGGAAAGGTGCTGCTGAAATTGTTCTCGCTTGCTGTACAGGGTATATTGATGCAAATGACCAGTTGGTGGAGATGAGTGAGGAGAAGATGACTTTTTTCAAAAAAGCTATTGAAGACATGGCTGCTGAAAGTCTACGTTGTGTTGCCATTGCATATAGATCATATGAGAAGGAGAAAGTTCCAGATAATGAGGAACAACTTGCTCACTGGTCTTTGCCAGACGATGACCTTGTTTTACTAGCTATTGTTGGTATCAAGGACCCTTGTCGACCTGGTGTCAAAGATTCAGTACAGCTTTGCCAAAAAGCCGGTGTTAAGGTAAAGATGGTCACGGGTGACAATGTCAAGACTGCGAAGGCAATTGCTGTGGAATGTGGAATACTTACTTCACTTGCTGATGCTACAGAGAGAACTGTCATTGAAGGAAAAACATTTCGAGCCTTATCAGATTCAGAGAGAGAAGAAATTGCGGACTCTATATCGGTTATGGGAAGGTCATCTCCCAATGACAAACTGTTGTTGGTACAAGCATTAAGGAGGAAGGGTCATGTTGTAGCTGTAACTGGGGATGGAACAAATGATGCTCCTGCACTTCACGAGGCGGATATTGGTCTTGCAATGGGTATTGCTGGTACAGAAGTTGCCAAAGAGAGCTCTGATATCATTATTTTAGATGACAACTTTGCTTCAGTTGTGAAGGTTGTCAGATGGGGTCGGTCTGTTTATGCGAATATTCAGAAATTTATCCAGTTTCAGCTGACAGTCAATGTGGCAGCTCTTGTTATAAATGTTGTTGCTGCGGTTTCCTCTGGTGATGTTCCACTGAACGCAGTGCAGCTTCTCTGGGTGAATCTTATCATGGATACTCTGGGAGCACTAGCCTTGGCTACTGAACCGCCAACTGATCACCTGATGGATCGGACTCCTGTGGGTCGAAGAGAACCTCTCATAACAAATATTATGTGGAGGAATTTGCTGCTACAGGCGATGTATCAAGTGTCTGTCTTGCTTGTTCTCAATTTCCGAGGTATAAGCATATTGGGTCTGGAGCATCAACAGCATGAACATGCAATCAAAGTGAAGAACACTTTGATCTTCAATGCATTTGTTCTCTGTCAGATCTTCAATGAATTTAATGCACGTAAGCCAGATGAATTCAACATTTTTAAAGGAGTCACCAAAAACTTCCTTTTTATGGGGATAGTGGCATTTACTGTTGTGCTTCAGGTTATCATTGTTGAATTTCTCGGGAAGTTCACTACAACTACTAGGCTTAATTGGAAGCAGTGGCTCATTTCTGTCGTTATTGGAGTCATTGGTTGGCCCCTTGCTGTGGTTGGGAAATTGATACCAGTACCGGAAACTCCCATCAATAACGTTTTCTCTAGAATTCGAAGAACTGAAAAAAAGAAGGAAACTGGGGCTTCTCAATAG 3282 0.4394 MSFLNGSSPRRTPPPENTDIEAGPLSRRSSDVHDDGNSSDPFDIARTKHASIDRLRRWRQAALVLNASRRFRYTLDLKKEEEKKQTLRKIRAHAQAIRAAYLFKAAGGQAQGHGQGQGNEAIKPPSTSTGEFPIGPEQLASISREHDTASLQQYGGVAGVSNLLKTDLEKGISGDDADLLRRRNAFGSNNYPRKKGRSFVMFLWDACKDLTLVILMVAAAASLALGIKSEGIKEGWYDGGSIAFAVVLVIVVTAVSDYKQSLQFRDLNEEKRNIHLEVVRGGRRVEISIYDLVVGDVIPLNIGNQVPADGIVITGHSLSIDESSMTGESKIVHKDSKDPFMMSGCKVADGSGTMLVTGVGINTEWGLLMASISEDTGEETPLQVRLNGVATFIGIVGLTVAVVVLIVLLARYFSGHTKNADGSKQFTAGRTKVGDAVDGAIKIITVAVTIVVVAVPEGLPLAVTLTLAYSMRKMMADKALVRRLSACETMGSATTICSDKTGTLTMNQMTVVEVYAGGSKINPPHQLESSPKLRSLLIEGVAQNTNGSVFVPEGANDVEVSGSPTEKAILHWGIKVGMNFATDRSESSIIHVFPFNSEKKRGGVAIQTTDSDVHIHWKGAAEIVLACCTGYIDANDQLVEMSEEKMTFFKKAIEDMAAESLRCVAIAYRSYEKEKVPDNEEQLAHWSLPDDDLVLLAIVGIKDPCRPGVKDSVQLCQKAGVKVKMVTGDNVKTAKAIAVECGILTSLADATERTVIEGKTFRALSDSEREEIADSISVMGRSSPNDKLLLVQALRRKGHVVAVTGDGTNDAPALHEADIGLAMGIAGTEVAKESSDIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVAALVINVVAAVSSGDVPLNAVQLLWVNLIMDTLGALALATEPPTDHLMDRTPVGRREPLITNIMWRNLLLQAMYQVSVLLVLNFRGISILGLEHQQHEHAIKVKNTLIFNAFVLCQIFNEFNARKPDEFNIFKGVTKNFLFMGIVAFTVVLQVIIVEFLGKFTTTTRLNWKQWLISVVIGVIGWPLAVVGKLIPVPETPINNVFSRIRRTEKKKETGASQ 1093
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g02319 1093 SFLD p-type atpase 479 856 IPR044492 -
Trre3g02319 1093 FunFam Calcium-transporting ATPase 50 106 - -
Trre3g02319 1093 FunFam Calcium-transporting ATPase 205 262 - -
Trre3g02319 1093 MobiDBLite consensus disorder prediction 109 135 - -
Trre3g02319 1093 NCBIfam HAD-IC family P-type ATPase 437 520 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Trre3g02319 1093 NCBIfam HAD-IC family P-type ATPase 770 884 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Trre3g02319 1093 SUPERFAMILY Calcium ATPase, transduction domain A 275 370 IPR008250 -
Trre3g02319 1093 PRINTS P-type cation-transporting ATPase superfamily signature 828 840 - -
Trre3g02319 1093 PRINTS P-type cation-transporting ATPase superfamily signature 719 729 - -
Trre3g02319 1093 PRINTS P-type cation-transporting ATPase superfamily signature 497 511 - -
Trre3g02319 1093 PRINTS P-type cation-transporting ATPase superfamily signature 804 823 - -
Trre3g02319 1093 PRINTS P-type cation-transporting ATPase superfamily signature 321 335 - -
Trre3g02319 1093 PRINTS P-type cation-transporting ATPase superfamily signature 697 708 - -
Trre3g02319 1093 Gene3D - 178 373 - -
Trre3g02319 1093 Pfam Ca2+-ATPase N terminal autoinhibitory domain 39 82 IPR024750 GO:0005516
Trre3g02319 1093 CDD P-type_ATPase_Ca_PMCA-like 179 937 - -
Trre3g02319 1093 ProSitePatterns E1-E2 ATPases phosphorylation site. 499 505 IPR018303 -
Trre3g02319 1093 Pfam haloacid dehalogenase-like hydrolase 494 818 - -
Trre3g02319 1093 Gene3D - 494 849 IPR023214 -
Trre3g02319 1093 SMART Cation_ATPase_N_a_2 153 227 IPR004014 -
Trre3g02319 1093 SFLD Haloacid Dehalogenase 479 856 - -
Trre3g02319 1093 SUPERFAMILY Calcium ATPase, transmembrane domain M 154 1067 IPR023298 -
Trre3g02319 1093 FunFam Calcium-transporting ATPase 253 373 - -
Trre3g02319 1093 PANTHER CATION TRANSPORTING ATPASE 119 1068 - -
Trre3g02319 1093 Pfam Cation transporter/ATPase, N-terminus 155 222 IPR004014 -
Trre3g02319 1093 SUPERFAMILY HAD-like 495 909 IPR036412 -
Trre3g02319 1093 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 504 701 IPR023299 GO:0000166
Trre3g02319 1093 Pfam Cation transporting ATPase, C-terminus 889 1065 IPR006068 -
Trre3g02319 1093 Pfam E1-E2 ATPase 275 475 - -
Trre3g02319 1093 FunFam Calcium-transporting ATPase 507 704 - -
Trre3g02319 1093 NCBIfam calcium-translocating P-type ATPase, PMCA-type 146 1068 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Trre3g02319 1093 MobiDBLite consensus disorder prediction 26 45 - -
Trre3g02319 1093 Gene3D - 205 1055 - -
Trre3g02319 1093 Gene3D - 50 105 - -
Trre3g02319 1093 Gene3D - 507 704 IPR023299 GO:0000166
Trre3g02319 1093 FunFam Calcium-transporting ATPase 821 1070 - -
Trre3g02319 1093 MobiDBLite consensus disorder prediction 112 134 - -
Trre3g02319 1093 FunFam Calcium-transporting ATPase 9 plasma membrane-type 351 521 - -
Trre3g02319 1093 PRINTS Sodium/potassium-transporting ATPase signature 240 260 - -
Trre3g02319 1093 PRINTS Sodium/potassium-transporting ATPase signature 615 633 - -
Trre3g02319 1093 PRINTS Sodium/potassium-transporting ATPase signature 490 511 - -
Trre3g02319 1093 MobiDBLite consensus disorder prediction 1 45 - -
Trre3g02319 1093 FunFam Calcium-transporting ATPase 697 849 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g02319 Trre-Chr3 21448037 21461182 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g02319 1 1089 Primary Pumps ATPases AT5G57110 73.578 0.0 1620
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g02319 K01537 - gmx:100792945 1831.99