LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre3g02317	ATGGACTTGCCAAGAAACATGGCTGCTCCTCAACAAGAAGACTCTAAGAAACAAAAAGGAGCAGACAAACGTCATTCTCCCATTCCAAAAAGTAGACTGGAAGAAATATTCACGACACTGGAACATCCTACCGAGATCCAAAGAAGTGAGATAGCCAAAGAGCCTGGACTTCAACCAAAACAAGTTCAGTTTTCGTTTCAAAATCGCCGGACTGTAAAAAAGTATCAAAATGAGAAAACAACTTCCAATGAACTTCGTGCTGAAAATGAAAGACTTCACAATGAGAACATCCAGATGAAGGAGCAATTGAAGAATATTCGTTGCATAACATGTGGCCGTAGATTTTGTAAGAATAATGAGATGGAACAACTTCGGCTTGAAAATGATCGTCTCAAAGAAGAGGTAAGTTAA	411	0.3893	MDLPRNMAAPQQEDSKKQKGADKRHSPIPKSRLEEIFTTLEHPTEIQRSEIAKEPGLQPKQVQFSFQNRRTVKKYQNEKTTSNELRAENERLHNENIQMKEQLKNIRCITCGRRFCKNNEMEQLRLENDRLKEEVS	136

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre3g02317	136	Pfam	Homeodomain	30	72	IPR001356	GO:0003677
	Trre3g02317	136	ProSiteProfiles	'Homeobox' domain profile.	16	76	IPR001356	GO:0003677
	Trre3g02317	136	Gene3D	-	5	94	-	-
	Trre3g02317	136	SMART	HOX_1	18	80	IPR001356	GO:0003677
	Trre3g02317	136	PANTHER	HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1	17	135	IPR042160	-
	Trre3g02317	136	MobiDBLite	consensus disorder prediction	1	32	-	-
	Trre3g02317	136	SUPERFAMILY	Homeodomain-like	13	77	IPR009057	-
	Trre3g02317	136	CDD	homeodomain	19	70	IPR001356	GO:0003677
	Trre3g02317	136	MobiDBLite	consensus disorder prediction	15	32	-	-
	Trre3g02317	136	Coils	Coil	114	134	-	-
	Trre3g02317	136	Coils	Coil	75	109	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre3g02317	Trre-Chr3	21401925	21403085	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre3g02317	24	135	Homeobox Transcription Factor Family	AT1G05230	40.000	4.21e-22	89.0

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	HB-other	Trre3g02317		Homeodomain	7.6e-09	CL0123

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre3g02317	K09338		-	egt:105965116	116.701