Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g02316 ATGGACTTGCCAAGAAACATGGCTGCTCCTCAACAAGAAGACTCTAAGAAACAAAAAGAAGCAGACAAACGTCATTCTCCCATTCCAACAAGTAGATTGGAAGAAATATTCACGACACTGGAACATCCGACCGAGATCCAAAGAAGTGAGATAGCCAAAGAGCTTGGACTTCAACCAAAACAAGTTCAGTTTTCGTTTCAAAATCGTCGGACTGTAAAAAAGTATCAAAATGAGAAAACAACTTCCAATGAACTTCGTGCTGAAAATGAAAGACTTCGCAATGAGAACATCCAGATGAAGGAGCAATTGAAGAATATTCGTTGCATAACATGTGGCCGTAGATTTTGTAAGAATCATGAGATGGAACAACTTCGGCTTGAAAATGCTCGTCTCAAAGAAGAGGTAAGTTAA 411 0.3917 MDLPRNMAAPQQEDSKKQKEADKRHSPIPTSRLEEIFTTLEHPTEIQRSEIAKELGLQPKQVQFSFQNRRTVKKYQNEKTTSNELRAENERLRNENIQMKEQLKNIRCITCGRRFCKNHEMEQLRLENARLKEEVS 136
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g02316 136 CDD homeodomain 24 70 IPR001356 GO:0003677
Trre3g02316 136 MobiDBLite consensus disorder prediction 1 31 - -
Trre3g02316 136 ProSiteProfiles 'Homeobox' domain profile. 16 76 IPR001356 GO:0003677
Trre3g02316 136 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 18 135 IPR042160 -
Trre3g02316 136 Coils Coil 114 136 - -
Trre3g02316 136 MobiDBLite consensus disorder prediction 12 30 - -
Trre3g02316 136 Gene3D - 5 94 - -
Trre3g02316 136 Coils Coil 75 109 - -
Trre3g02316 136 SUPERFAMILY Homeodomain-like 13 77 IPR009057 -
Trre3g02316 136 Pfam Homeodomain 29 72 IPR001356 GO:0003677
Trre3g02316 136 SMART HOX_1 18 80 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g02316 Trre-Chr3 21397760 21398888 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g02316 18 135 Homeobox Transcription Factor Family AT1G05230 41.322 2.09e-25 98.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Trre3g02316 Homeodomain 1.2e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g02316 K09338 - egt:105965116 113.235