Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g02312 ATGAAGGAGCAATTGAAGAATATTCTTTGCATAACATGTGGCCGTAGATTTTGTAAGAATCATGAGATGGAACAACTTCGGCTTGAAAATGCTCGTCTCAAAGAAGAGGTGAAGATGGACTTGTCAAGAAACATGGCTGCTCCTCAACAAGAAGACTCTGAGAAACAAAAAAGAGCACACAAAGGTCATTCTCCCATTCTGACAAGTAGATTGGAAGAAATATTCACGACACTTGAACATCCGACCGAGATCCAAAGAAGTGAGATAGCCAAAGAGCTTGGACTTAGACCAACACAAGTTCAGTTTTGGTTTCAAAAACGTCGGCTTGTAAAAAAGTATCAAAATGAGAAAGCAACTTCCAATGAACTTCGTGCTGAAAATGAAAGACTTCACAATGAGAACATCCAGATGAAGGAGCAATTGAAGAATATTCTTTGCATAACATGTGGCTGTAGATTTTGTAAGACTCATGAGATGGAACAACTTCGGCTTGAAAATGCTCGTCTCAAAGAAGAGGTACTCAAGAAGAAAGCTGTGATCGACGGTGATGCTTAG 555 0.3964 MKEQLKNILCITCGRRFCKNHEMEQLRLENARLKEEVKMDLSRNMAAPQQEDSEKQKRAHKGHSPILTSRLEEIFTTLEHPTEIQRSEIAKELGLRPTQVQFWFQKRRLVKKYQNEKATSNELRAENERLHNENIQMKEQLKNILCITCGCRFCKTHEMEQLRLENARLKEEVLKKKAVIDGDA 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g02312 184 Coils Coil 16 43 - -
Trre3g02312 184 Gene3D - 39 121 - -
Trre3g02312 184 Pfam Homeodomain 68 109 IPR001356 GO:0003677
Trre3g02312 184 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 54 175 IPR042160 -
Trre3g02312 184 SMART HOX_1 53 118 IPR001356 GO:0003677
Trre3g02312 184 CDD homeodomain 57 108 IPR001356 GO:0003677
Trre3g02312 184 Coils Coil 106 143 - -
Trre3g02312 184 SUPERFAMILY Homeodomain-like 50 115 IPR009057 -
Trre3g02312 184 Coils Coil 159 179 - -
Trre3g02312 184 MobiDBLite consensus disorder prediction 41 63 - -
Trre3g02312 184 ProSiteProfiles 'Homeobox' domain profile. 54 114 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g02312 Trre-Chr3 21323336 21327248 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g02312 55 179 Homeobox Transcription Factor Family AT1G05230 39.844 3.49e-26 102
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Trre3g02312 Homeodomain 3.1e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g02312 K09338 - tpra:123886057 152.14