Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g02311 ATGACGAGGAAGAAGTTGAAACTTGCCTTTTTGTCCGATGATAAAGCAAGGAAGGCTATTTATAAGAAAAGAATGAAGAGTATCATCAAGAAGGTGAGTGAACTCGCCATTCTTTGCAATATTCCAGCCTGTGCAATAATTTCAAATCCTTTTAATTCTAAAACAGAGAAGATTACTAAAGCCAGAGAGAAACTTGAAAATAAAAGGCAAGCGACTCGTGAGAAGGAGCTGACAATTCGTATGATTGAGTACATGAAAAATAAAACTCTGCCTAATGATCTATCTGTTTTAGATTTGAAAGAGTTTGATAAGTTAAGTAAGAAGCATCTCAAAGATATTGATAACAAAATTGTTGAGCTAAATGGATCCAATTAG 375 0.3387 MTRKKLKLAFLSDDKARKAIYKKRMKSIIKKVSELAILCNIPACAIISNPFNSKTEKITKAREKLENKRQATREKELTIRMIEYMKNKTLPNDLSVLDLKEFDKLSKKHLKDIDNKIVELNGSN 124
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g02311 124 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 12 50 IPR002100 GO:0003677|GO:0046983
Trre3g02311 124 Coils Coil 51 75 - -
Trre3g02311 124 Gene3D - 13 93 IPR036879 GO:0003677|GO:0046983
Trre3g02311 124 SUPERFAMILY SRF-like 1 83 IPR036879 GO:0003677|GO:0046983
Trre3g02311 124 ProSiteProfiles MADS-box domain profile. 1 47 IPR002100 GO:0003677|GO:0046983
Trre3g02311 124 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g02311 Trre-Chr3 21320638 21321117 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g02311 1 56 Type I MADS-box Gene Family AT3G05860 51.786 1.26e-16 71.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Trre3g02311 SRF-TF 6.2e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g02311 - - gmx:100792290 121.324