Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g02306 ATGGCCAGTTTTTCCAAAGTAACTCCTCTCATTGAACTTCATACCAATAGCTTAGATTGGACTATTAAGGTTAGGGTTGTGAGAATGTGGACGATTCAAAGCTCCATTAATCCAGAGAAAATTACTGAGATTGAGCTAATATTGCTTGACCAAGAGGGTAAAAAGATTCAAGCAACTGTGACTTCTGAATGTGTCGATCGTTTCTCGAAAGTCTTATTTGAAGGTGGTATATACATGATTGTGTTTTTTCGTGTGGTAGAAAATATTAGTTCATGTGTGATCACCTTCAACCAGTTCAAGTTATCTTTCAATCCAAGCACCATAATTTTCCAATCTCAGAGCTTAACTATTCCTCACTATTCGTTAACCTTATTTACTTCTCAAAGAATTGGAAACTACAAAAATGGCTCAACTTATTTGATTGATTTTGTGGGGGTTATTACTCATGTGTATGCAGAACCATTTGATAATCTTGGTCAGGAGATTACTAATGCTGTTAGAATCGTATTAATCGATAAGAGAGGTACTTGTGAGTGTGTTTTGTTGGGAGAATACGTTGATCAATTCAAGAAAATGATGTCTGAATCCTCGACTAAGTTATCCATTTTGGTGTTGCAGTTTGTTAAGATTAATAGCAAAAGAGGAATTGCTTATCTTGAAAGTGTCAAAGATATTACTAAAATATTACTGAATCCTCATATGATTGAAGTGGAGAAATTGAAAATTGATATGGGTTATATCATCAATTCCTATCCTTTGGCTAAGAGAGAGTATTATTCAAGTTCTAAGATGTGTAAGCAGTTGGAGTTCAATGGTTTATACCCTCACAAAACAATACATGAATTTATTAACAGTGTGGAGGATGGATTGTTTGTTTTGTGTGGCAAAATGGTGGGTCTTTTCAAGGTTGATAAATGGTTTTACCCTGTTTGTTTCTGTGGGGCTTTCTTGAATGTTGGTAATGGCTCATACTATTGTGGTCGTTGCCATGTTACTGTTTTCGGTGGTACACCCAAGTGCAAGGTTCAAGTTGGTTTTCAAGATTTCACATCTGCAGCACTGTTTCCCATGCTTCATAATTTGATTAAGGAAATAGATTGCATCAATGCTAATGGATCAACATTTGGTGTAAGTACTCCCGAGGAGAAGGTTTTGATTGATAAGATGGTGCTCTTGATTGTAAAGAAGATTCAAAGATCCGATGATTTGTCTGATGATGTTGTTGAAGTTTTACGCATGACCGATGATCCTGAACTCATCATGAAATATCAAATGGATGGAAATAATTTTACTCCAGCTAAGAGTATTTTTCCGACACCTTCTTCCGATTTAGTAGCTCAAAGTGGTGAGTTTGGGATCCCATTATCTTCTCCACCTTGTGTTGATGTTGATAAAAATGCATTTGTTGAAGATAATTTTCAGGCGATTCTCGATAGTACAGCTTCCGAATTCCACAGAAAATATAAAGAATTCAAAATTCGTAATGATCGTGTGATGTCTATCGTTGGTCCGAGTGGTGAAGGGTCTTCTTCCAATGTTAACTAA 1545 0.3599 MASFSKVTPLIELHTNSLDWTIKVRVVRMWTIQSSINPEKITEIELILLDQEGKKIQATVTSECVDRFSKVLFEGGIYMIVFFRVVENISSCVITFNQFKLSFNPSTIIFQSQSLTIPHYSLTLFTSQRIGNYKNGSTYLIDFVGVITHVYAEPFDNLGQEITNAVRIVLIDKRGTCECVLLGEYVDQFKKMMSESSTKLSILVLQFVKINSKRGIAYLESVKDITKILLNPHMIEVEKLKIDMGYIINSYPLAKREYYSSSKMCKQLEFNGLYPHKTIHEFINSVEDGLFVLCGKMVGLFKVDKWFYPVCFCGAFLNVGNGSYYCGRCHVTVFGGTPKCKVQVGFQDFTSAALFPMLHNLIKEIDCINANGSTFGVSTPEEKVLIDKMVLLIVKKIQRSDDLSDDVVEVLRMTDDPELIMKYQMDGNNFTPAKSIFPTPSSDLVAQSGEFGIPLSSPPCVDVDKNAFVEDNFQAILDSTASEFHRKYKEFKIRNDRVMSIVGPSGEGSSSNVN 514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g02306 514 Gene3D - 263 371 IPR012340 -
Trre3g02306 514 Gene3D - 116 245 IPR012340 -
Trre3g02306 514 Gene3D - 6 113 IPR012340 -
Trre3g02306 514 CDD RPA1_DBD_A_like 21 109 - -
Trre3g02306 514 Pfam Domain of unknown function DUF223 45 126 IPR003871 -
Trre3g02306 514 SUPERFAMILY Nucleic acid-binding proteins 7 113 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g02306 Trre-Chr3 21227356 21230087 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g02306 6 370 Core DNA Replication Machinery Family AT5G45400 20.716 3.41e-07 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g02306 - - tpra:123886453 437.958