Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g02303 ATGGATAATGCTTTTGATTTGCTTGGTGCTGTTACTCCTGGGAAAGATTCATGGCGTTTCAAAGTTCGTGTGCTTCGTTTATGGAATGCCTACTCTTTTTTGAAACCTGATGTCGTGAATTCCCTTGAGATGGTCTTGATTGATGAAAAGGGTTCCGAAATTCATGCTTCCATTCGTCGTCAGCTGTTGTATTTGTTCCGTGATAAAATCTCTGAGGGGAAGGTTTACAAGATGTCTCATTTCACTGTTGGACCAGAATCCGGTTTGTATCGCACTACTGATCATCCTTATAAACTTATATTTGAGATGAAAACAAAAGTTCAACTCTCAGAGAGTAAGAAAATTGATGAATATGGACTGTCATTGTCCACTATTGGAGCTGTTAAAGGTTATGGAGCTGGGCATGATTTCTTAGTTGATGTAGTTGCTTTGGTTACTTCAACTTCTCCTGAGAAGGAGTATGTTCGTGATGGGAAGGTGACCAAGATGGTTGTTCTTCAAATTATTGATAATAGCGGTCATTGTGAGTGTGCTTTATTTGGGGCTTACGTTGATGAACTTCAAAGAATGCTTGCAAATGCTGGAGGTAGTTTGCCTGTGCTTGTGATTCAGTTTGCCAAAATCAAGGATTTTCGTGGAAATGTTTCTATTCAAAATGTCTTGAATGCTACTAGGATTTATATTAATCCTTCAATGCCAGAAGCTGATGCTTTCAAGGAAGGCCTTTCTATTGTTGGTATTGTTCTTTCTACTGCTCTACCCACTGTTAGTGTTAATGCTAGACCTTCTCTTGAGGAAGACTTTTTGTTGAAGTATCCAAAAACTTCCATCTCTGATTTACTTGACATCAACAAGGATGGTATCTATGTTGTTGGTGGGATTGTTGATGGGTTGGTGGATCTTGAAGATTGGTGGTATGCTGCGTGTAGTTGCCATAGGAGTGTTTCTGCTGATTCTGGTGCATACTATTGCCATCATTGTGTCAAACATGTTTTCAGAATGGTTCCAAGGTTTAGGCTGAAGTTAAGGGTTAGTGATGGATCTGGTCAAGCTGTGTTTGTTCTTTTTGATGGAGATGTAAATTTCCTATTGGGGAAACATTGCCATGAGTTGGTTTCTGTGCCTAAGTCAAAGAATGCTGGATATTATCCTCCAGAATTGGAGTTGCTCAAAGGGATGAAATTGTTGTTTAAAGTTGAGAAAAGTCCTAGGATTGGTTCTATATTGTTTGATGGTTCCTTCAGGGTAAAGAGGGTATGCAGTGATATGTCCATTATTGATGCTTTTGATTCGGATTTTCTGAATGAAAATTCTGATTCTGATAGTGATGATGATGATGAAAGTCAAGATGAAGAAACTGTTGAGGGTAGTCAGGTTGAGGATTTGGTTGTTGGTTCTGTTGTCTCACCTACCTCTGTGATAGTTGTAGATGATGAAGATGTATCGGCTGGTCTTATAACACCTCCACCAATTAATTTGGCTGATAATTCTGATAAGGATTTGGAAGTGTTCACCTCTGGAATTGATGATTGGAATCATGATAAAGTTGCTTCTGCAAAGCGTAATCTACTTGCTGCTTTTACTGGGTCTCTTGATGCTGGAGCAGGTTCTTCCAAGGTGACTAAAAAGTCTACTGAAAGTGTTGATGGTGGATCAGTTTCGTCCAAGCTTGCCAAGAATCCCAAGGGCTGA 1692 0.3954 MDNAFDLLGAVTPGKDSWRFKVRVLRLWNAYSFLKPDVVNSLEMVLIDEKGSEIHASIRRQLLYLFRDKISEGKVYKMSHFTVGPESGLYRTTDHPYKLIFEMKTKVQLSESKKIDEYGLSLSTIGAVKGYGAGHDFLVDVVALVTSTSPEKEYVRDGKVTKMVVLQIIDNSGHCECALFGAYVDELQRMLANAGGSLPVLVIQFAKIKDFRGNVSIQNVLNATRIYINPSMPEADAFKEGLSIVGIVLSTALPTVSVNARPSLEEDFLLKYPKTSISDLLDINKDGIYVVGGIVDGLVDLEDWWYAACSCHRSVSADSGAYYCHHCVKHVFRMVPRFRLKLRVSDGSGQAVFVLFDGDVNFLLGKHCHELVSVPKSKNAGYYPPELELLKGMKLLFKVEKSPRIGSILFDGSFRVKRVCSDMSIIDAFDSDFLNENSDSDSDDDDESQDEETVEGSQVEDLVVGSVVSPTSVIVVDDEDVSAGLITPPPINLADNSDKDLEVFTSGIDDWNHDKVASAKRNLLAAFTGSLDAGAGSSKVTKKSTESVDGGSVSSKLAKNPKG 563
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g02303 563 MobiDBLite consensus disorder prediction 534 554 - -
Trre3g02303 563 MobiDBLite consensus disorder prediction 434 457 - -
Trre3g02303 563 CDD RPA1_DBD_B_like 140 239 - -
Trre3g02303 563 Gene3D - 272 424 IPR012340 -
Trre3g02303 563 CDD RPA1_DBD_C 277 399 IPR047192 -
Trre3g02303 563 MobiDBLite consensus disorder prediction 532 563 - -
Trre3g02303 563 PANTHER OS03G0429900 PROTEIN 7 400 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Trre3g02303 563 Pfam Replication factor-A C terminal domain 300 382 IPR013955 -
Trre3g02303 563 Gene3D - 114 244 IPR012340 -
Trre3g02303 563 CDD RPA1_DBD_A_like 21 107 - -
Trre3g02303 563 SUPERFAMILY Nucleic acid-binding proteins 5 111 IPR012340 -
Trre3g02303 563 Pfam Domain of unknown function DUF223 43 112 IPR003871 -
Trre3g02303 563 SUPERFAMILY Nucleic acid-binding proteins 276 401 IPR012340 -
Trre3g02303 563 SUPERFAMILY Nucleic acid-binding proteins 123 247 IPR012340 -
Trre3g02303 563 Gene3D - 7 109 IPR012340 -
Trre3g02303 563 MobiDBLite consensus disorder prediction 434 460 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g02303 Trre-Chr3 21218421 21220954 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g02303 8 365 Core DNA Replication Machinery Family AT5G08020 23.262 1.87e-17 84.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g02303 - - tpra:123893724 607.06