Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g02288 ATGGAGAATATTGGTGATGAGTACAAGCATTTATGGGAGACCAACATATGGGAGACCAACATGTTCCTCCAAACACAAGAACTTGACAGCTGGGGATTGGATGAAGCTTTTTCAGGATACTATGATTCAAGTTCCCCTGATGGTGCAGCTTCATCAGCAGCTTCATCTAAGAACATTGTTTCTGAAAGGAATAGAAGGAAGAAGCTTAATGAAAGACTCTTTGCACTTAGATCAGTGGTCCCCAACATTAGCAAGATGGATAAGGCTTCAATTATTAAGGATGCAATTGAGTATATACAACATTTACAAGAGCAAGAGAAGATTATTCAAGCTGAGATAATGGAACTTGAATCAGGGATGCCAAATAATATTAATCCAAATTATGATTTTGATCAAGAGCTTCCTGTGTTGCTAAGGTCCAAGAAGAAGAGAACAGATCAATTGTATGATTCTGTCAATTCAAGAAACTTTCCTATTGAAGTCCTTGAGCTTAGGGTGACATACATGGGAGAGAATACAATTGTAGTGAGCTTGACATGTAGCAAAAGGACAGACACAATGGTAAAATTGTGTGAAGTGTTCGAATCTTTGAAGCTTAAGATTATTACAGCCAATATCACTTCCTTTTCAGGCAGGCTTTTGAAGACAGTCTTCATTGAGGCAAATGAAGAAGAGAAAGATCTATTGCAGATAAAGATCGGAACAGCTATTGCAGCTCTTAATGATCCTCTAAGCCCTATGAGCATCTAA 750 0.38 MENIGDEYKHLWETNIWETNMFLQTQELDSWGLDEAFSGYYDSSSPDGAASSAASSKNIVSERNRRKKLNERLFALRSVVPNISKMDKASIIKDAIEYIQHLQEQEKIIQAEIMELESGMPNNINPNYDFDQELPVLLRSKKKRTDQLYDSVNSRNFPIEVLELRVTYMGENTIVVSLTCSKRTDTMVKLCEVFESLKLKIITANITSFSGRLLKTVFIEANEEEKDLLQIKIGTAIAALNDPLSPMSI 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g02288 249 Pfam Helix-loop-helix DNA-binding domain 60 103 IPR011598 GO:0046983
Trre3g02288 249 Coils Coil 99 119 - -
Trre3g02288 249 Gene3D - 52 124 IPR036638 GO:0046983
Trre3g02288 249 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 53 102 IPR011598 GO:0046983
Trre3g02288 249 SMART finulus 59 108 IPR011598 GO:0046983
Trre3g02288 249 FunFam Basic helix-loop-helix (BHLH) DNA-binding superfamily protein 49 119 - -
Trre3g02288 249 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 55 119 IPR036638 GO:0046983
Trre3g02288 249 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 45 233 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g02288 Trre-Chr3 20990372 20998847 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g02288 1 220 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G57150 64.865 8.39e-87 255
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre3g02288 HLH 6.2e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g02288 - - gmx:100817978 383.259
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre3g02288 3 20990372 20998847 Trre3g02288 3 20990372 20998847 ECH