Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g02287 ATGACGGAACGAATTAAGTTCAGCGTATTATGCAGCTTATTTACATGGACACAACGAACCAAATCGCCGGCGAAGAAACGCGCAAAGTTCCGGAAGTTTCTCGATTCTTTCTGCACCGATCGTAACTACTTCCCTGCAATTCGACTCATTCTTCCTAATCTCGATCGTGAACGTGGTTCCTATGGTCTCAAAGAATCCGTTCTCGCTACTTCACTCATCGATGCTCTTGGTTTGTCCAAAGACTCGCACGATGCTATTCGCCTTATCAATTGGCGGAAAGGTGGTTCCAAAACTGGTGCTAATGCCGGTAATTTCGCCCTTGTCGCCGCCGAGGTGCTGCAGCTTAGGCAAGGTACTGCTCCAGGTGGATTAACGATAAAGGAGTTGAATGACTTGCTTGATCAATTGGCTTCGAGTGAAAATAGGGGTGAGAAGACTTTGGTTCTTTCAACCCTTATCCAAAAGACAAATGCACAGGAAATGAAGTGGATTATCATGATAATCCTGAAAGATTTGAAGCTAGGATTTAGTGAAAAAAGCATTTTTCATGAATTCCATCCAGATGCTGAAGACTTGTTTAATGTTACATGTGACTTAAAATTAGTTTGTGAAAAGCTAAGGGATCGGAACCAACGTCATAAGCGGCAGGATATTGAAATTGGAAAAGCTGTGCGTCCTCAATTAGCTAAGAGAGTTGCTAACGCAGCTGAAGCATGGAAGAAGCTTCATGGTAAGGAAGTGGTTGCTGAGTGCAAATTTGATGGTGATCGCATTCAAATTCATAAAAATGGAACAGAGATACATTTCTTCTCAAGGAACTTTATTGATCACTCTGAATATGCACATGGCATGTCGGAAATCATAATTCAAAACATTCTTGTGGATAGATGCATACTTGATGGTGAAATGTTGGTCTGGGATACATCCTTGAATCGTTTTGCTGAATTTGGCTCTAATCAGGAAATAGCCAAGGCAGCAAGGGATGGGCTTGAGAGTAACAGACAGTTATGCTACGTTGCATTTGACATCCTTTATTTTGGAGATACTAGTGTAATTCACCAAACATTGAAGGAGCGGCATGGGATTCTACGTAAAGTTGTGAAGCCATTGAAAGGCCGTTTGGAAATTTTACTACCTAATGGTGGTATCAATAGTCATCGGTCTTCTGGAGAACCATGTTGGTCGTTTATTGCTCATAATGCAGATGAAGTTGAAAGATTTTTCAAAGAAACCATTGAAAATAGAGATGAGGGAATTGTAGTAAAAGACCTCAGCTCCAAATGGGAACCTAGTGACCGCAGTGGAAAATGGCTAAAACTGAAGCCTGACTACGTTCAAGCTGGCTCTGATCTGGATGTTCTTATCATAGGTGGTTACTATGGTTCTGGACGACGTGGGGGAGAGGTTGCTCAATTCTTGGTGGGTCTTGCAGAGCGTCCCTCCCCAAATACACATCCCAAACGATTTATCTCCTTTTGTAGAGTTGGTACTGGACTTTCTGATGACGAGCTTGAAGCAGTAGTAACCAAACTAAAACCTTACCTCAGAAAGTATCCAAAGAAGATGCAACCAAGTTTTTATCAAGTTACTCACCATTCCAAAGAAAGACCTGATGTGTGGGTTGATAGCCCTGAAAAATCAATTATTCTGTCTATAACCAGTGAAATCCGAACTATTGAATCTGAGGTATTCGCTGCACCTTACTCTCTGAGATTTCCTCGGATTGACAGGGTGAGATATGATAAGGCTTGGCATGAATGCCTTGATGTACAATCATTTATAGAATTGGTGCAATCTAGCAACGGTACCACACAGAGGGATACAGAATATGGGAGCAAGGACAGTAAACCAAAACGCATGAAATCCTCTGTAAGGGGGGAAAAGAAAAATGTGTCCATTGTTCCTTCCCATTTAAGTCAAACTGATGTTTCCAGTGTTAAGGGAGGTTCCTTAATGTTTTCAAATATGATGTTCTACTTTGTTAATGTCCCTCCATCTCATTCTCTCGAGTCGTTCCACAAATTAGTTGCTGAGAATGGCGGCACTTTCTCAATGAATTTGAATAACTCAGTCACCCATTGTGTTGCAGCAGACAGCAAAGGGTTTAAATTTGAAGCTGCAAAACGTCGTGGTGATGTCATTCATTATACATGGGTATTGGAGTGCTGTGCACAAAAGAAGCTCATCCCCTTACAGTCGAAGTACTTCCTCTTTGTATCTGACCTGACCAAGAAGAAGTTACAAGAAGAGATTGACGAGTTCTCAGACTCTTACTATTTGGATCTTGATCTTCGAGACATAAAACAGCTCTTAAGCAATATTAATAGGTCAGAAGATGTCAGTACTGTCGACCATTACAGGAAAAAATACTGCCCAAAGGATAAGTGGTCTGTCTTTAATGGATGCTCCATTTATTTCCACACCACAATGCCATCATTGAAAGAAGATTGGCAAATTTTACTGGAACTTTCTTCGAAGAGATTCAAGCTTGAAGTTCTCATGGGTGGTGGAAAAGTTACCTCTAATCTTAAATCTGCAACTCATGTGGTGGCCTTGTTTGTACCAAGTTTTCGTACCAACTATGATGAAGAAATACATAGTAGTTTTACTTCAGTTGAGAGAAAGCTTCTAGGTAGCAAGAAGTTGCATATAGTTAATTCCAAGTGGTTAGAAGATTGTTTGAATAGTTGCCAAAGATTATCAGAAGACACTTATAGCTTGAAGCCTTATGGAATAGAAGAATCAACTGCTAAGGATTGTGAACATGACTTGGCGGCAGATGCTCACCTGGTTGAAGATAATGTACAAGACCAAAATCAATCTTTTTCCAAAAAGGGAAGTAAGAAGAGTAGTGCCAAAGCTGCTTCTGAAGACAGTTTGGCTTTAGCATCACAAGAGCAGCGTGGCCCAAGGAAACGAGGAAGACCTGTGGGCACAGGTATTAAAAAAATAAAAACAGACAGAAACCAGGCTCGAAGAGCACGATCGCAAATTGCGAAAAAACGTGCTAAAATAAGTGAATATGAATCAGATGAAAGTGATTCTCGTGATATAAGACCATATGAGCAAGAGGCTAACATTACAGAAGGAAGTCTTGATTTTCACAATGAACATTCGGAACCACATGAGACTGAGAGAACTCATAATGTCCAAGGTACTGAAGTAGCAGAAAGTTCTGAACGAAACAAGGGAATCGAGCTAGAGGATTTCAAGGACTGCCAACATGAAAATATGTCTGTTCCCGAAATTGAAATGAATAATGTGCACAATGACCATAGTAGTCAGGGGACTGAGAAACTTGAAATTATGACTGATCCCGTGCAGGCAATGTTACTTGACATGATTCCTAGCCTTGCCATGAACAAAGTTGAGCAACCTACGAATCATCATGCTGAGGAAGAGAAGCCACCAGAAATCTCTCATCATGTTGAGGAAGAGAAACCACCAGAAATCTCCAACGAAAAGCCTCCGACTACAAAGAAAAAGAAAGTTAGCCTCAAGGCCATCGCTGGTGATCTGCTCAATGATTGGTAG 3534 0.41 MTERIKFSVLCSLFTWTQRTKSPAKKRAKFRKFLDSFCTDRNYFPAIRLILPNLDRERGSYGLKESVLATSLIDALGLSKDSHDAIRLINWRKGGSKTGANAGNFALVAAEVLQLRQGTAPGGLTIKELNDLLDQLASSENRGEKTLVLSTLIQKTNAQEMKWIIMIILKDLKLGFSEKSIFHEFHPDAEDLFNVTCDLKLVCEKLRDRNQRHKRQDIEIGKAVRPQLAKRVANAAEAWKKLHGKEVVAECKFDGDRIQIHKNGTEIHFFSRNFIDHSEYAHGMSEIIIQNILVDRCILDGEMLVWDTSLNRFAEFGSNQEIAKAARDGLESNRQLCYVAFDILYFGDTSVIHQTLKERHGILRKVVKPLKGRLEILLPNGGINSHRSSGEPCWSFIAHNADEVERFFKETIENRDEGIVVKDLSSKWEPSDRSGKWLKLKPDYVQAGSDLDVLIIGGYYGSGRRGGEVAQFLVGLAERPSPNTHPKRFISFCRVGTGLSDDELEAVVTKLKPYLRKYPKKMQPSFYQVTHHSKERPDVWVDSPEKSIILSITSEIRTIESEVFAAPYSLRFPRIDRVRYDKAWHECLDVQSFIELVQSSNGTTQRDTEYGSKDSKPKRMKSSVRGEKKNVSIVPSHLSQTDVSSVKGGSLMFSNMMFYFVNVPPSHSLESFHKLVAENGGTFSMNLNNSVTHCVAADSKGFKFEAAKRRGDVIHYTWVLECCAQKKLIPLQSKYFLFVSDLTKKKLQEEIDEFSDSYYLDLDLRDIKQLLSNINRSEDVSTVDHYRKKYCPKDKWSVFNGCSIYFHTTMPSLKEDWQILLELSSKRFKLEVLMGGGKVTSNLKSATHVVALFVPSFRTNYDEEIHSSFTSVERKLLGSKKLHIVNSKWLEDCLNSCQRLSEDTYSLKPYGIEESTAKDCEHDLAADAHLVEDNVQDQNQSFSKKGSKKSSAKAASEDSLALASQEQRGPRKRGRPVGTGIKKIKTDRNQARRARSQIAKKRAKISEYESDESDSRDIRPYEQEANITEGSLDFHNEHSEPHETERTHNVQGTEVAESSERNKGIELEDFKDCQHENMSVPEIEMNNVHNDHSSQGTEKLEIMTDPVQAMLLDMIPSLAMNKVEQPTNHHAEEEKPPEISHHVEEEKPPEISNEKPPTTKKKKVSLKAIAGDLLNDW 1177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g02287 1177 Gene3D BRCT domain 794 907 IPR036420 -
Trre3g02287 1177 MobiDBLite consensus disorder prediction 603 626 - -
Trre3g02287 1177 PANTHER DNA LIGASE 4 3 1169 IPR029710 GO:0003677|GO:0003910|GO:0005524|GO:0006281|GO:0051103
Trre3g02287 1177 CDD Adenylation_DNA_ligase_IV 214 446 IPR044125 GO:0005524
Trre3g02287 1177 SUPERFAMILY ATP-dependent DNA ligase DNA-binding domain 3 208 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Trre3g02287 1177 MobiDBLite consensus disorder prediction 1123 1164 - -
Trre3g02287 1177 CDD BRCT_DNA_ligase_IV_rpt1 652 738 - -
Trre3g02287 1177 MobiDBLite consensus disorder prediction 609 626 - -
Trre3g02287 1177 MobiDBLite consensus disorder prediction 1036 1060 - -
Trre3g02287 1177 MobiDBLite consensus disorder prediction 1036 1050 - -
Trre3g02287 1177 FunFam DNA ligase 444 603 - -
Trre3g02287 1177 FunFam DNA ligase 220 443 - -
Trre3g02287 1177 Gene3D - 1 218 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Trre3g02287 1177 ProSitePatterns ATP-dependent DNA ligase AMP-binding site. 250 258 IPR016059 GO:0003909
Trre3g02287 1177 FunFam DNA ligase 1 218 - -
Trre3g02287 1177 Pfam DNA ligase N terminus 6 186 IPR012308 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Trre3g02287 1177 ProSitePatterns ATP-dependent DNA ligase signature 2. 417 441 IPR016059 GO:0003909
Trre3g02287 1177 Pfam ATP dependent DNA ligase C terminal region 465 582 IPR012309 GO:0003910|GO:0006281|GO:0006310
Trre3g02287 1177 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 185 443 - -
Trre3g02287 1177 Pfam ATP dependent DNA ligase domain 226 441 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Trre3g02287 1177 MobiDBLite consensus disorder prediction 980 1019 - -
Trre3g02287 1177 MobiDBLite consensus disorder prediction 936 963 - -
Trre3g02287 1177 Gene3D - 444 603 IPR012340 -
Trre3g02287 1177 Gene3D BRCT domain 663 777 IPR036420 -
Trre3g02287 1177 FunFam DNA ligase 663 777 - -
Trre3g02287 1177 MobiDBLite consensus disorder prediction 1126 1164 - -
Trre3g02287 1177 NCBIfam ATP-dependent DNA ligase 61 597 IPR000977 GO:0003910|GO:0005524|GO:0071897
Trre3g02287 1177 ProSiteProfiles BRCT domain profile. 794 907 IPR001357 -
Trre3g02287 1177 Coils Coil 991 1011 - -
Trre3g02287 1177 Gene3D DNA ligase/mRNA capping enzyme 220 443 - -
Trre3g02287 1177 CDD OBF_DNA_ligase_IV 448 590 - -
Trre3g02287 1177 SUPERFAMILY BRCT domain 652 737 IPR036420 -
Trre3g02287 1177 ProSiteProfiles ATP-dependent DNA ligase family profile. 329 478 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Trre3g02287 1177 MobiDBLite consensus disorder prediction 936 1019 - -
Trre3g02287 1177 ProSiteProfiles BRCT domain profile. 648 736 IPR001357 -
Trre3g02287 1177 SMART BRCT_7 796 897 IPR001357 -
Trre3g02287 1177 SMART BRCT_7 650 726 IPR001357 -
Trre3g02287 1177 Pfam BRCT domain, a BRCA1 C-terminus domain 651 733 IPR001357 -
Trre3g02287 1177 SUPERFAMILY BRCT domain 788 909 IPR036420 -
Trre3g02287 1177 SUPERFAMILY Nucleic acid-binding proteins 449 598 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g02287 Trre-Chr3 20975030 20989039 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g02287 62 599 Core DNA Replication Machinery Family AT1G08130 24.788 4.59e-33 136
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g02287 K10777 - gmx:100816002 1823.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre3g02287 3 20975030 20989039 Trre3g02287 3 20975030 20989039 ECH