Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g02282 ATGCGCGACACTGAGAAGTTAAATAGCAAAGGATCTGCAAAATCCAATAACTCAAAGGAACATATTGAGTTGAAGGTAGATTCGCCGCGACTCAAAAAAAGTAGCACAAAAGACGAAGGGAAGAAACACAAACTGAAATCAAAATCTCATAAACTCAGAGGCTGCACAAATGCGCCAGAGAGGACAGCGACTAATGATTCTTCTAACAAGGCACCAAACAAGAAGAACGATTCTTCAAATAAAAGATTGATTATTAGAAAAAATCTTCATAAGACTGATAGGAATTCTTCACCGGTTCAGCCGTCAACAAAGATACAAAGAGGACAAATTTCTCTTGATCAGGAGGAAAATATTCAAAAACGTAAGAGAAGGAGGAAGAAGAAAAAACAAAAACAAAATGTAGATCTTGACGATACTTCACGCCTCCAGAGACGAACAAGGAATCTCTTAATCAGAATGAAGCAAGAGCAGAACCTTATCGATGCTTACTCCGGAGAAGGTTGGAAAGGTCAAAGTCGAGAGAAGATTAGGCCAGAAATGGAGCTACAAAGAGCAAAGAAGCAGATTTTGAAATGCAAGCTTAGTATCCGCGATGCCATTCGCCAGCTGGATTCTCTCAGTTCAGTTGGTAGCATTGAAGGTTCCGTCATTGCTACAGATGGATCGGTTTCTCATGAACATATATTCTGCGCAAATTGCAAGATGAACGAAGCTTTTCCAGCTAATGATATTATACTCTGCGATGGCACATGTAATCGTGCGTTTCACCAGAGATGTCTTGATCCTCCTTTGGATACTGAAAACATTCCGCCTGGAGACCAAGGTTGGTTTTGCAAGTTTTGTGAATGCAAGATAGAAATACTCGAGGCAACAAATGCGCATCTCGGGACTCATTTCTCCTTAGACAGTACTTGGCAGGATGTATTCAAGGAAGAGGCTGCTATTCCTGACGGCGATGATGCATTACTAAATCAAGAAGAAGAATGGCCGTCAGATGATCCTGAAGATGATGACTATAATCCAGAGAGGAAAGAAGACAGCAATGGCGGCATCGACACGGAAGGAAATGATGAAAATGCATCTGATGATGATTCAAGTAGTTCTGGCAGTATGTGGTCTTTAAATGGCGAATGTTCTCTGTTGGATGAAGGCATCAACCTTGAATATTATTCTGCTAACGGCCACGTAGATTCTGATGAATCCGGGGAAATAGCATGCGGCCGTAGGCAGCGAAGAGCTGTTGACTACAAGAAACTTTATGATGAAATGTTTGGGAAGGATGCTCTTCCATATGAACAAGTGAGTGAAGACGAAGACTGGGGTCCTGGAAAAAGACGGCGAAGAGAAAAGGAGTCGGATGCAGTTAATACTCTTATGACTATGCATGAAAGTGAAAATAAACATCCGAATAATGAGAAGAAAGATAGAATAAGAGGGGATTCTTCAGGCATAAAAAGACCTTGTTTCAGGCTTCCACATGATGCAGTCGAGAAGCTTCGCCAGGTTTTTGCAGAGAATGAGCTTCCTCCAAAATCTGTGAAGGATGCCCTTTCGAAAGAATCGGGGATTGATGCTGCAAAGGTTAACAAATGGTTCAAAAATGCACGTTACATGGCACTTAAAACGAGAAAGCTTCGAGAAGGAGGGCAACAGCCTCAGAGTTTGACTTCTAAGACCTCAAAGGATTCTACGTCACAACATGTGCAGAAAGATGAGATTTTGAAACCGAAGGTCTCAAATATCACTGTGGTTCATTCCCATAAGAAGATTGAAAATGTCACTGGCAAAGAGAAAACAAAGGCATCCAACAGTCCCTTGAAGAAAAAGCGAAAGCGACCCGAAATACCTCCTCCACCCTTGAGTGAAAATGGCAACAAGGAATCTACGGAGGTCAATGATGATTTCAACGAAGATGTTAGCTTGATGAAACTGTTGAAAGAAAGGAAAAAGAAAGTAAGTTTTGCATTCGAAGGAGACTATGAGGCAGCCGAGATGGAATTCGAAAGACTCAGCAAAGTAAAGATGAAACTAGATAGATTGAAGCAAAAATTAAGTCAAGTTCAAAATTACAGATCAAAGGGTTCAGATGAAGTTTATTTGAATGAGCCATCTATTGTTTATGTGCCTGTAGCTGAGTTAAGGGAAAAGGTTAAATAG 2157 0.4098 MRDTEKLNSKGSAKSNNSKEHIELKVDSPRLKKSSTKDEGKKHKLKSKSHKLRGCTNAPERTATNDSSNKAPNKKNDSSNKRLIIRKNLHKTDRNSSPVQPSTKIQRGQISLDQEENIQKRKRRRKKKKQKQNVDLDDTSRLQRRTRNLLIRMKQEQNLIDAYSGEGWKGQSREKIRPEMELQRAKKQILKCKLSIRDAIRQLDSLSSVGSIEGSVIATDGSVSHEHIFCANCKMNEAFPANDIILCDGTCNRAFHQRCLDPPLDTENIPPGDQGWFCKFCECKIEILEATNAHLGTHFSLDSTWQDVFKEEAAIPDGDDALLNQEEEWPSDDPEDDDYNPERKEDSNGGIDTEGNDENASDDDSSSSGSMWSLNGECSLLDEGINLEYYSANGHVDSDESGEIACGRRQRRAVDYKKLYDEMFGKDALPYEQVSEDEDWGPGKRRRREKESDAVNTLMTMHESENKHPNNEKKDRIRGDSSGIKRPCFRLPHDAVEKLRQVFAENELPPKSVKDALSKESGIDAAKVNKWFKNARYMALKTRKLREGGQQPQSLTSKTSKDSTSQHVQKDEILKPKVSNITVVHSHKKIENVTGKEKTKASNSPLKKKRKRPEIPPPPLSENGNKESTEVNDDFNEDVSLMKLLKERKKKVSFAFEGDYEAAEMEFERLSKVKMKLDRLKQKLSQVQNYRSKGSDEVYLNEPSIVYVPVAELREKVK 718
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g02282 718 MobiDBLite consensus disorder prediction 435 488 - -
Trre3g02282 718 ProSitePatterns Zinc finger PHD-type signature. 230 281 IPR019786 -
Trre3g02282 718 FunFam pathogenesis-related homeodomain protein 484 548 - -
Trre3g02282 718 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 221 278 IPR013083 -
Trre3g02282 718 SMART PHD_3 229 282 IPR001965 -
Trre3g02282 718 MobiDBLite consensus disorder prediction 542 634 - -
Trre3g02282 718 SUPERFAMILY Homeodomain-like 479 543 IPR009057 -
Trre3g02282 718 Coils Coil 112 132 - -
Trre3g02282 718 MobiDBLite consensus disorder prediction 58 74 - -
Trre3g02282 718 MobiDBLite consensus disorder prediction 324 340 - -
Trre3g02282 718 PANTHER POLYCOMB-LIKE TRANSCRIPTION FACTOR 11 717 - -
Trre3g02282 718 MobiDBLite consensus disorder prediction 94 113 - -
Trre3g02282 718 Coils Coil 670 690 - -
Trre3g02282 718 FunFam pathogenesis-related homeodomain protein-like 221 281 - -
Trre3g02282 718 CDD homeodomain 485 537 IPR001356 GO:0003677
Trre3g02282 718 MobiDBLite consensus disorder prediction 1 141 - -
Trre3g02282 718 MobiDBLite consensus disorder prediction 465 483 - -
Trre3g02282 718 MobiDBLite consensus disorder prediction 75 93 - -
Trre3g02282 718 MobiDBLite consensus disorder prediction 324 371 - -
Trre3g02282 718 MobiDBLite consensus disorder prediction 435 456 - -
Trre3g02282 718 ProSiteProfiles Zinc finger PHD-type profile. 227 284 IPR019787 -
Trre3g02282 718 ProSiteProfiles 'Homeobox' domain profile. 482 542 IPR001356 GO:0003677
Trre3g02282 718 CDD PHD_PRHA_like 229 281 IPR045876 -
Trre3g02282 718 Pfam PHD-finger 229 284 IPR019787 -
Trre3g02282 718 MobiDBLite consensus disorder prediction 547 563 - -
Trre3g02282 718 Coils Coil 710 718 - -
Trre3g02282 718 Gene3D - 484 548 - -
Trre3g02282 718 MobiDBLite consensus disorder prediction 16 42 - -
Trre3g02282 718 SMART HOX_1 484 546 IPR001356 GO:0003677
Trre3g02282 718 SUPERFAMILY FYVE/PHD zinc finger 221 286 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g02282 Trre-Chr3 20928836 20932998 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g02282 129 571 Homeobox Transcription Factor Family AT4G29940 57.330 2.36e-163 488
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-PHD Trre3g02282 PHD 4.7e-11 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g02282 - - gmx:100787118 935.636
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre3g02282 3 20928836 20932998 Trre3g02282 3 20928836 20932998 ECH