Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g02265 ATGATTGTTCTTGAGTTAACTGATCACATTGGAAAGTGTGAATGTGCTTTGTTTGGCGGCTACGTTGATCAGTTTCGGCAGATGTTTGCTAAGATTGTTGATGTGATGCCAGTTGTTGTTCTTCAATTCGCTAAGGTCAAGGTTTTTAGGGATAAAATTTCCCTCCATAATGTTATGAGTACCACTAGGCTTTTGCTCAATCCTGACATTGATGATGTTGTTTCGTTCAGACATAGTCTTGCCATTCATGGTCTTGAGACAAGTCAGCATGTTTCTATCCTTGGTCCTGGTGCTAAGCCATCCTTTGAGGAGGAGTTTTTACGCACATATCCCGTTAAGACCATTGTTGGTTTGCATGAGGTGGTTGATGATGGAACCTTCATTGTTGCTGCGACTATTGTTGGTCTGGTTGATGAGGAGAATTGGTGGTATGCTGCCTGTAAATGCCATAAGAGTGTGCCTTCTGACTCTGACGCCTACTACTGCAGTAGGTGTGACAAGCATGTTTTCCAAATGATTTATAGGTTTAGGGTTAAATTTCATGTCACTAATGGCTCCGGAGATGCAACTTTCGTTCTCTTTGATGGTCATATGAACTATCTTGTGGGGGAGCACTGTGTTGGTTTGGTTTTTGCTGCCAATGCTGGGAATGGTGGTAGTTATCCTTTTGAATTACTAGCTTTGATGGGTTCCAGGTTTTTGTTCAAGGTTGAGAAGACTACCTCTCTTATTGTGTCTTTGGATGATTCTTTTAAGGTTAAGCGTGTGTGCAATGATTCAGATGTTCTCAAATCCTTTGATCTTATGGGTTCTGATTCCAACACTTCTGAGGTTGCTATTTTTCTTGGATGTTTTGTTTTGTAG 864 0.4109 MIVLELTDHIGKCECALFGGYVDQFRQMFAKIVDVMPVVVLQFAKVKVFRDKISLHNVMSTTRLLLNPDIDDVVSFRHSLAIHGLETSQHVSILGPGAKPSFEEEFLRTYPVKTIVGLHEVVDDGTFIVAATIVGLVDEENWWYAACKCHKSVPSDSDAYYCSRCDKHVFQMIYRFRVKFHVTNGSGDATFVLFDGHMNYLVGEHCVGLVFAANAGNGGSYPFELLALMGSRFLFKVEKTTSLIVSLDDSFKVKRVCNDSDVLKSFDLMGSDSNTSEVAIFLGCFVL 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g02265 287 Pfam Replication factor-A C terminal domain 127 205 IPR013955 -
Trre3g02265 287 CDD RPA1_DBD_C 112 256 IPR047192 -
Trre3g02265 287 Gene3D - 1 89 IPR012340 -
Trre3g02265 287 Gene3D - 108 258 IPR012340 -
Trre3g02265 287 PANTHER OS03G0429900 PROTEIN 45 243 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Trre3g02265 287 SUPERFAMILY Nucleic acid-binding proteins 4 85 IPR012340 -
Trre3g02265 287 SUPERFAMILY Nucleic acid-binding proteins 122 239 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g02265 Trre-Chr3 20780514 20781839 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g02265 27 203 Core DNA Replication Machinery Family AT5G08020 23.529 1.54e-07 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g02265 - - tpra:123893724 289.271