Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g02260 ATGGCTTCTACTTCAAGGAGATTACCAACACCTGCAGAAAGAGAAAAATGGAAACACATTTTTGACACTACCATAGATCCAAATCTGGTACCAATTGAAATACCTCAGCCTTTTTTCAACAAAATGAAAAGTGAGTTTATAAATCACACATTTGGTTGGATCAGGGGTCCCAAAAAAATGAAATTCATGGTTAGATATCTTCAATCCAATAGTGGTATCAAGCTCTCCTCTGGAGTGTGTGTTTCTCGATATTTTGGATTTGCTGTACCAACAAGGGTGACACTTAGCTATGTGATTGACGAGAATACTTTTTGGATGAGAATTTACCCTCCACTTCAACCTGTGAAAACTGAATTTCCACCAGAGGAAACTTTGAAAAGGAAGCATCAAAATGATGATCAAGATGAGCCAAATTCCAAGAGGTGCAAGAGACCTAAAGCCAACAAACAAGCTGTGTATTTGAAGTCCCCCCCTCCATGTCAAAATTCCAAGAATAATGATGATCAAGATGAGCCAAATTCCAAGAGGTGCAAGAAACCTAGAGGCAACAAACAAGCTGTGTCTTTGAAGTCCCCCCCTCCATGTAAAAAACAGAAAATTCTGAAGTCTACCCCAAAGGAATTAAGCAAACAACGACACCCAAATTTGAAGATTCGTCCATCTGAGAGAAAAAAATATTTGAAGTCCACACCAAAGAAATCAAACAAACAACATCAGTCTAAGCATTCAAGGAAACCAGTAATTGTAAAGCTGAATCCTGATGGAAGCTATAGTTGGGAGAAGATTGTAACTACAGCTGCTGCAGCTGATGCAAGACCTCAAGTCATGCATTTTCCTAAGCAATTGTCTACATTGTTTTTGGGAGAAAAACAAAACAAGATGTTGGTCAAAGCTGGAGCAGGAGATACATTCTCTTGCAAGCTTATTACAGCGGGAAGGAATGCAGCTGAAAAATATATATCAAAAGAGTGGTCCAAATTTGTGAGAAGAAACAACCTCCAAGCTGGAGACAAGCTCATTTTCACTCTTCAGAACCCACCAACAAAACTCCTGATTCAGATCATCCGTTGTAGTGCTCACGACTGA 1086 0.3932 MASTSRRLPTPAEREKWKHIFDTTIDPNLVPIEIPQPFFNKMKSEFINHTFGWIRGPKKMKFMVRYLQSNSGIKLSSGVCVSRYFGFAVPTRVTLSYVIDENTFWMRIYPPLQPVKTEFPPEETLKRKHQNDDQDEPNSKRCKRPKANKQAVYLKSPPPCQNSKNNDDQDEPNSKRCKKPRGNKQAVSLKSPPPCKKQKILKSTPKELSKQRHPNLKIRPSERKKYLKSTPKKSNKQHQSKHSRKPVIVKLNPDGSYSWEKIVTTAAAADARPQVMHFPKQLSTLFLGEKQNKMLVKAGAGDTFSCKLITAGRNAAEKYISKEWSKFVRRNNLQAGDKLIFTLQNPPTKLLIQIIRCSAHD 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g02260 361 CDD B3_DNA 276 356 IPR003340 GO:0003677
Trre3g02260 361 ProSiteProfiles B3 DNA-binding domain profile. 261 358 IPR003340 GO:0003677
Trre3g02260 361 MobiDBLite consensus disorder prediction 121 143 - -
Trre3g02260 361 Pfam B3 DNA binding domain 276 356 IPR003340 GO:0003677
Trre3g02260 361 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 122 357 IPR044837 -
Trre3g02260 361 MobiDBLite consensus disorder prediction 200 228 - -
Trre3g02260 361 SUPERFAMILY DNA-binding pseudobarrel domain 268 356 IPR015300 -
Trre3g02260 361 MobiDBLite consensus disorder prediction 121 247 - -
Trre3g02260 361 Gene3D - 195 359 IPR015300 -
Trre3g02260 361 MobiDBLite consensus disorder prediction 229 245 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g02260 Trre-Chr3 20675183 20676919 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Trre3g02260 B3 3.3e-08 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g02260 - K12567 tpra:123904760 209.149