Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Trre3g02222 | ATGGGTTCTTGTGTTCTTGTTGGTGTTATTTGGAAAGGGACATTATATATTGCTAATCTTGGAGACTCTCGAGCTGTCATCGGTTCAATTGGTCAATCTAACAAGATCGTTGCTAAACAGTTGACCAAAGAGCACAATGCCTGCAAAGCTGATATCAGAACAGAACTTAGGTCTTTGCATCCAGATGATTCGCAAATTGTTGTTTTGAAACATGGAACTTGGCGCGTTAAAGGCATTATCCAGGTATCAAGATCTATAGGAGATGCATTTTTGAAACAGTCGGAGTTCTCCTTTGATCCATCATTCCCGAAGTTTCACTTGTCTGATCCTATCCGCCAACCGGTGCTATCAGCAGAACCATCTATGTGTTCAATCGTTTTACAATCTAATGATCAATTCGTTATATTTGCATCTGACGGACTTTGGGAACACATGACAAATCAGGAAGCTGCTGAGATTGTTCATAGCAACCCTAGAACTGGAATTGCAAGAAGACTTCTTCAGACTGCTTTGAATGAGGCGGCAAGGAAAATCGATGTGAGTTATGAAGATCTGATGAAGGTCGAAAAGGGGATTAGGCGACTTTTCCACGATGATATCACAATTGTTGTTATCTTCATCGACCACGAGTTGCAAAATCAGAATGTTAATGTTCCTGAGTTATCCATAAAAGGTTTTGTCGACACAGTTGGACCATCGAAATTTAGTAGTTTCCAAGAAATGCAATGA | 729 | 0.4019 | MGSCVLVGVIWKGTLYIANLGDSRAVIGSIGQSNKIVAKQLTKEHNACKADIRTELRSLHPDDSQIVVLKHGTWRVKGIIQVSRSIGDAFLKQSEFSFDPSFPKFHLSDPIRQPVLSAEPSMCSIVLQSNDQFVIFASDGLWEHMTNQEAAEIVHSNPRTGIARRLLQTALNEAARKIDVSYEDLMKVEKGIRRLFHDDITIVVIFIDHELQNQNVNVPELSIKGFVDTVGPSKFSSFQEMQ | 242 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Trre3g02222 | 242 | SUPERFAMILY | PP2C-like | 1 | 208 | IPR036457 | - | |
| Trre3g02222 | 242 | CDD | PP2Cc | 1 | 207 | IPR001932 | - | |
| Trre3g02222 | 242 | SMART | PP2C_4 | 1 | 205 | IPR001932 | - | |
| Trre3g02222 | 242 | PANTHER | PROTEIN PHOSPHATASE | 2 | 205 | IPR015655 | GO:0004722|GO:0006470 | |
| Trre3g02222 | 242 | Pfam | Protein phosphatase 2C | 2 | 175 | IPR001932 | - | |
| Trre3g02222 | 242 | Gene3D | - | 1 | 218 | IPR036457 | - | |
| Trre3g02222 | 242 | ProSiteProfiles | PPM-type phosphatase domain profile. | 1 | 207 | IPR001932 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Trre3g02222 | Trre-Chr3 | 20299743 | 20300802 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Trre3g02222 | 1 | 238 | PP2C-type Phosphatase Gene Family | AT5G06750 | 68.313 | 1.05e-119 | 345 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Trre3g02222 | K01102 | - | gmx:100778238 | 390.578 |