Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g02209 ATGGCCGATGCTCAACAAAAACAGCACCGTAACAATCCAAAAAGAGCAGGAAAACATCATTCTCCCATTCAAACAAGTAGATTGGAAGAAATATTCGTGACATGCAAACATCCGACTAAGATCCAAAGATGTGATATCGCAAAAGAGATCGGGCTTCAACCAAAACAAGTGCAGTTTTGGTTTCAAAACAAAAGGACTCAAAAAAAGTCTCAAAATGAGAAAGCAGTTAGCATTGAACTTCGTGCTGAAAATGAAAAGCTACACAATGAGAATATTCAGATGAAGGAACAATTGAAGAATACTCTTTGCATAACATGTGGTCGTCCGTTTTGTATGAATCACGGAAACTTGGTGGAACAACTTCGGTTTGAAAATGCTCGTCTCAAAGAAGAGGTGAGTAAATATGACTACTTCTATGGAATAACTTTTGTAATGGACAATGTACTTTTTGTATAA 456 0.3662 MADAQQKQHRNNPKRAGKHHSPIQTSRLEEIFVTCKHPTKIQRCDIAKEIGLQPKQVQFWFQNKRTQKKSQNEKAVSIELRAENEKLHNENIQMKEQLKNTLCITCGRPFCMNHGNLVEQLRFENARLKEEVSKYDYFYGITFVMDNVLFV 151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g02209 151 ProSiteProfiles 'Homeobox' domain profile. 11 71 IPR001356 GO:0003677
Trre3g02209 151 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 13 134 IPR042160 -
Trre3g02209 151 CDD homeodomain 14 72 IPR001356 GO:0003677
Trre3g02209 151 Coils Coil 77 100 - -
Trre3g02209 151 ProSitePatterns 'Homeobox' domain signature. 46 69 IPR017970 GO:0000981|GO:0006355
Trre3g02209 151 Gene3D - 1 76 - -
Trre3g02209 151 SMART HOX_1 13 75 IPR001356 GO:0003677
Trre3g02209 151 MobiDBLite consensus disorder prediction 1 23 - -
Trre3g02209 151 SUPERFAMILY Homeodomain-like 8 72 IPR009057 -
Trre3g02209 151 Pfam Homeodomain 19 69 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g02209 Trre-Chr3 19982217 19984486 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g02209 5 134 Homeobox Transcription Factor Family AT1G05230 44.275 2.86e-32 118
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Trre3g02209 Homeodomain 7.3e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g02209 K09338 - gmx:100794552 124.405