Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g02202 ATGTGCAACAGTTCGAATAAAAAGCCTTCTCAAACTGGTTTGATTAGGGAACATGGATATGCAAGAGAAGAAGAACTTCATCATAAGATATCTGCATTGCTCAAGTTTTCGGCCAAAGATGATGTAATAGCTTTCAAAGATGCTGTTGAAAAATACGGTTGTGATGTCGATGGGGTAGGGTTATGGTATGGAAGGAGGGTTGGCTCAAAGGAAATGAGTTATGAAGAAAGGACTCCTCTTATGGTTGCTGCCTTATTTGGAAGCAAGGGTGTGTTGTGTTATATTCTTGAAACCGGTCGTGTTGATGTTAACCGAGCGTGTGGTTCGGATGGTGCTACTGCTCTTCATTGTGCTGTTATTGGTTGTTCTGCTGCTTCTGTCGAGGTTGTCAAGCTTTTGGTTGATGCATCTGCAGATGTTAATTCTCTTGATGCGAACGGTAACCGGTCTAGTGATTTGATTGTTTCGGCTTCTAATAGTGTCTTTGGTTCAAGGAAGAAGAGGATACTAGCCATACTAGAAGGTAAAGATGGTGTTGATTATGACGCCGGTTGCCTTAAGAAAGAAGGTTTCGAAATGGGGAATCTGCAACAAGATTCAGGTTCACCTCGAATCGAGAAGAAAGATTATCCGGTTGATACATCCCTACTGGACATAAAGAATCCGATATATAGTACAGATGAATTTAGGATGTATACTTTTAAAGTCAAGCCTTGTTCAAGGGCTTATTCTCATGATTGGACCGAGTGCCCCTTTGCTCATCCTGGGGAAAATGCAAAGCGCCGTGATCCGACGAAATATCATTACAGCTGTGTTCCTTGTCCCGAATTTCGGAATAGATATTCATCATGCATTAAAGGCGATGCTTGTGAATATGCACATGGTATTTTTGAGAGCTGGCTTCATCCTGCTCTATATAGAACGAGGCATTGCAAAGATGCCACTAAATGCACAAGAAGGGTTTGTTTCTTTGCTCACACACCCGAAGAGCTTCGTCGGGTGTATGCTTTAACTGGTTCTGCTTTGCCTTCACCTACTTCATATTCAAATTCACCTAGTGCTTCTTCAATGGATTCTTTCACAATGAACTCTCCATCTGCGGCGATGTCACCTCTGACTCCATCTGCAGTGTCTTCTCCTTCATGCGGCGGAACCATGTGGCCGACTCAGTCTCATGTTGCAACCCCAACACTTCAGATGCCGGGACACAGAATGAATACTGCACATAATGCTAGAGATAATATTGAAGAGATGACAGGTCTTTCATCCCGGTTAAATAGGTTTTCAGGAGTGAATCTTACCAACCATGAAGACATTTTTGGGTCTTCGAGACAATCTCCATCGTCGATGCAGGTGCATCAGAATGTAAACCAGCAACTGCGAGGCTTTCCTTCTGACATTGCCAAATCAATTATGATTGGTTCACCACAATTCAGGGCTGATCCATCTATGAGTTCAAGATATGATGCCTTTACGAAGCGGAGTCATAGCTTTATTGAGCGCAGCAGCACGACAAGCTTTAATTCTGAGCTTCCTTCTGCTACGTCAGTCGCTGCGGCGCCTTCAAACTTCTCTGGTTGGGGCTCTCCACATGGAAAATTAGACTGGTCCATTCGCGGTGATGAACTCAACAAAATGAGGAAATCATATTCTTTCGGATTTCGAAACACAAATCGCTTTTCAACAATGGCTGCACCAAATGTTGATAATCCAAATATATTGTCAAGCCAAGAAACATGGGTTAATTCACTGCTGAAGAATGCTCCTCCAACATTGGAATCTGATCAATATTGTGTTCAATTTTAA 1806 0.4269 MCNSSNKKPSQTGLIREHGYAREEELHHKISALLKFSAKDDVIAFKDAVEKYGCDVDGVGLWYGRRVGSKEMSYEERTPLMVAALFGSKGVLCYILETGRVDVNRACGSDGATALHCAVIGCSAASVEVVKLLVDASADVNSLDANGNRSSDLIVSASNSVFGSRKKRILAILEGKDGVDYDAGCLKKEGFEMGNLQQDSGSPRIEKKDYPVDTSLLDIKNPIYSTDEFRMYTFKVKPCSRAYSHDWTECPFAHPGENAKRRDPTKYHYSCVPCPEFRNRYSSCIKGDACEYAHGIFESWLHPALYRTRHCKDATKCTRRVCFFAHTPEELRRVYALTGSALPSPTSYSNSPSASSMDSFTMNSPSAAMSPLTPSAVSSPSCGGTMWPTQSHVATPTLQMPGHRMNTAHNARDNIEEMTGLSSRLNRFSGVNLTNHEDIFGSSRQSPSSMQVHQNVNQQLRGFPSDIAKSIMIGSPQFRADPSMSSRYDAFTKRSHSFIERSSTTSFNSELPSATSVAAAPSNFSGWGSPHGKLDWSIRGDELNKMRKSYSFGFRNTNRFSTMAAPNVDNPNILSSQETWVNSLLKNAPPTLESDQYCVQF 601
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g02202 601 ProSiteProfiles Ankyrin repeat region circular profile. 110 144 - -
Trre3g02202 601 SMART ANK_2a 75 105 IPR002110 GO:0005515
Trre3g02202 601 SMART ANK_2a 110 142 IPR002110 GO:0005515
Trre3g02202 601 Gene3D - 27 171 IPR036770 -
Trre3g02202 601 ProSiteProfiles Zinc finger C3H1-type profile. 273 297 IPR000571 GO:0046872
Trre3g02202 601 MobiDBLite consensus disorder prediction 343 386 - -
Trre3g02202 601 SUPERFAMILY Ankyrin repeat 45 148 IPR036770 -
Trre3g02202 601 Gene3D - 268 333 - -
Trre3g02202 601 ProSiteProfiles Ankyrin repeat profile. 110 145 IPR002110 GO:0005515
Trre3g02202 601 Pfam Ankyrin repeats (3 copies) 63 142 IPR002110 GO:0005515
Trre3g02202 601 PANTHER UNKEMPT FAMILY MEMBER 35 587 IPR045234 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g02202 Trre-Chr3 19873275 19875080 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g02202 25 559 C2H2 Transcription Factor Family AT5G12850 39.776 2.24e-122 376
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Trre3g02202 Ank_2 6.1e-07 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g02202 - - mtr:11423139 751.895