Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g02179 ATGGAAGGCCAAAAAAATAAACGCAAGCGCGTTTATTCGGTTGAACCAAACAAAGTAGTGCAAGCAAAATTTACTAGAAACTATATGAACTATTTAGCACCAGCTTTGATGAAGATCAAGGAAGAAAGAAGAAGTTCTATAGAAGCCAAGAATGTTGAAAATGTTGTCAAGTATGAAGTGGACATGGCAATGGTTTTTTCATCTCAAGGTTTTGCTTGGAGTAATGCTCTAAAATTAAAGCTTCTAAAAGATGGTGGTGAAGGTTCATCAAGAATTAATTATCAACAAAATGAAATGGGCCCACTTGATTTTTCTAAAAAAAATAGTTCAAAGTCCGAGGTTAATAAGATTTTGGTGGAAAAAAATTTGGCTGAAGAAAATGATTACGATGAAGATGAGATTGTGGATGACCAATTGAGGTGTCTTAGAAAATTGATTCCAGGAGGAGAAGAGATTATGTGTGATGAGAAAATGGTGAGTGAATTAGAGAGCTATGTAAGTTGTTTGCAAATGCAAGTGAATATTCTAAAATGTCTCACTGATTAG 546 0.3407 MEGQKNKRKRVYSVEPNKVVQAKFTRNYMNYLAPALMKIKEERRSSIEAKNVENVVKYEVDMAMVFSSQGFAWSNALKLKLLKDGGEGSSRINYQQNEMGPLDFSKKNSSKSEVNKILVEKNLAEENDYDEDEIVDDQLRCLRKLIPGGEEIMCDEKMVSELESYVSCLQMQVNILKCLTD 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g02179 181 CDD bHLH_AtIBH1_like 125 180 IPR044549 GO:0006355
Trre3g02179 181 PANTHER TRANSCRIPTION FACTOR IBH1-LIKE 1 23 181 IPR044660 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g02179 Trre-Chr3 19519794 19520339 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g02179 6 180 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G30180 34.857 6.74e-22 85.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g02179 - - aprc:113852314 193.356
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g05273 15 62040495 62040977 Trre3g02179 3 19519794 19520339 PCT