Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g02152 ATGGAAAAGGAGAAGCTAGTTAAGTTCACTGATCAACAACTAAGGATTGCGACCGATAATTACTCTTATCGGTTGGGGTCAGGTGGTTTTGGAATTGTTTATAAAGGATGTTTTAGTAATGGAACCATGATAGCTGTCAAGGTTCTGCATGGGAGGTCTACCGAGAAAAATGATAAGCAATTTATGGCAGAAGTCGGAACAATTGGTAAAGTTCATCATTTCAACCTTGCCAGGCTATATGGTTTTTGTTTCGAAAAAAATATTATAGGACTTGTTTATGAATATATGGAAAATGGATCTCTTGACAAAGAAAATACTCACATAACGATGACTGGAGGAAGGGGGACGCCTGGTTATGCCGCACCTGAACTTTGGATGCCATTTCCCGTTACTTACAAATGCGATGTTTATAGTTTTGGGATACTATTATTTGAAATTATTGGTAGGAGAAGAAATCATGACGCTAGCATTTCAGAAAGCCGCGAATGGTTTCCAATGTTGGTTTGGAAAAAATTTGATGCTGAAGAAGTGGAAGACTTACTAGTGGCATGTGGGATAGAGGAGAAAAATATGGAGATTGTTGAGAGGATGGTTAAGTACCAACTAGAATTAGCATCTGCCTAA 624 0.383 MEKEKLVKFTDQQLRIATDNYSYRLGSGGFGIVYKGCFSNGTMIAVKVLHGRSTEKNDKQFMAEVGTIGKVHHFNLARLYGFCFEKNIIGLVYEYMENGSLDKENTHITMTGGRGTPGYAAPELWMPFPVTYKCDVYSFGILLFEIIGRRRNHDASISESREWFPMLVWKKFDAEEVEDLLVACGIEEKNMEIVERMVKYQLELASA 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g02152 207 Pfam Protein tyrosine and serine/threonine kinase 23 103 IPR001245 GO:0004672|GO:0006468
Trre3g02152 207 Pfam Protein tyrosine and serine/threonine kinase 108 149 IPR001245 GO:0004672|GO:0006468
Trre3g02152 207 Gene3D Phosphorylase Kinase; domain 1 1 95 - -
Trre3g02152 207 ProSiteProfiles Protein kinase domain profile. 19 207 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre3g02152 207 Gene3D Transferase(Phosphotransferase) domain 1 102 203 - -
Trre3g02152 207 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 107 201 - -
Trre3g02152 207 ProSitePatterns Protein kinases ATP-binding region signature. 25 47 IPR017441 GO:0005524
Trre3g02152 207 SUPERFAMILY Protein kinase-like (PK-like) 9 158 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g02152 Trre-Chr3 19223938 19224972 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g02152 2 101 Receptor kinase-like Gene Family AT1G29740 48.039 5.11e-23 94.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-Os Trre3g02152 PK_Tyr_Ser-Thr 1.6e-05 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g02152 - - gmx:100818128 222.246