Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g02120 ATGCCCTCTAGTGATTATCAAATAATGCAACCTCTCTCAAATTCCATGCCATATATGTATAATTTCAACACACAAATGCTGTACAATGAATACTACAACAACAATAACAACAACATAAGGGAGGTACAAAACCAAGCAGAAAGTGTTTCAATTTCCGGTTTAGATCAAGCAATACAACAAGAAGAACAAGCACAAGAACAGCAACAAAGGAGGAAAGTGTTTCATTGGACAAATGAAGAACACATGCTTTTCTTGGAAGGTCTTCAAGTTTGCAAGAAAGGAAAGTGGAAAGAAATCTCTCAAAAATATGTAAAGACAAAGACTTCAACTCAAATAGCAAGCCATGCTCAAAAGTATTTTAAAAGGCAACAACAAAAACTTGATGTTAAGAGCAAAGATATTAAAAGGAAACCTAGAAAAAGTATCCATGATAAGACGATTATTATGGATATTATGCCAGATACTCCAACTAATCAAAATCAAGTGATTCAACAAGTCAACAATAATGAAGCATCACCATCATTCCCGATTCTCAACTCATTCGATGAAATAACGGGCATGTATGATAATTTAACCGAGGAAGATTTTGCCATGATTAATGACATCTTGAATGAAGATGGAGAAGTGACCGGAGTTAATCAAAATCAAGTGATTCAAGTCGACAACAATGAAGCATCACTATCATCCTCAATTCTCAACTCATTCGATGAAATATCGAACATATATGATAATTTTACTGAGGAAGATTTTGTCATGATTAATGACTTCTTGAATGATGACGGAGAAGTAAACGGAGTTTCCTTTTAG 807 0.3408 MPSSDYQIMQPLSNSMPYMYNFNTQMLYNEYYNNNNNNIREVQNQAESVSISGLDQAIQQEEQAQEQQQRRKVFHWTNEEHMLFLEGLQVCKKGKWKEISQKYVKTKTSTQIASHAQKYFKRQQQKLDVKSKDIKRKPRKSIHDKTIIMDIMPDTPTNQNQVIQQVNNNEASPSFPILNSFDEITGMYDNLTEEDFAMINDILNEDGEVTGVNQNQVIQVDNNEASLSSSILNSFDEISNIYDNFTEEDFVMINDFLNDDGEVNGVSF 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g02120 268 Pfam Myb-like DNA-binding domain 76 120 IPR001005 -
Trre3g02120 268 ProSiteProfiles SANT domain profile. 76 124 IPR017884 -
Trre3g02120 268 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 30 204 IPR043363 -
Trre3g02120 268 Coils Coil 51 71 - -
Trre3g02120 268 CDD SANT 76 120 IPR001005 -
Trre3g02120 268 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 76 124 IPR017930 -
Trre3g02120 268 NCBIfam myb-like DNA-binding domain, SHAQKYF class 74 123 IPR006447 GO:0003677
Trre3g02120 268 Gene3D - 74 125 - -
Trre3g02120 268 SMART sant 72 122 IPR001005 -
Trre3g02120 268 SUPERFAMILY Homeodomain-like 69 124 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g02120 Trre-Chr3 18859369 18860287 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Trre3g02120 Myb_DNA-binding 5.9e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g02120 - - mtr:11423031 108.612