Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g02119 ATGCAACCTCTCTCAAATTCCATGCATCATATGTATAATTTTAACACAACAATGCCCTCTAGTGATTATCAAATAATGCAACCTCTCTCAAATTCCATGCCATATATGTATAATTTCAACACACAAATGCTGTACAATGAATACTACAACAACAATAACAACAACATAAGGGAGGTACAAAACCAAGCAGAAAGTGTTTCAATTTCCGGTTTAGATCAAGCAATACAACAAGAAGAACAAGCACAAGAACAGCAACAAAGGAGGAAAGTGTTTCATTGGACAAATGAAGAACACATGCTTTTCTTGGAAGGTCTTCAAGTTTGCAAGAAAGGAAAGTGGAAAGAAATCTCTCAAAAATATGTAAAGACAAAGACTTCAACTCAAATAGCAAGCCATGCTCAAAAGTATTTTAAAAGGCAACAACAAAAACTTGATGTTAAGAGCAAAGATATTAAAAGGAAACCTAGAAAAAGTATCCATGATAAGACGATTATTATGGATATTATGCCAGATACTCCAACTAATCAAAATCAAGTGATTCAACAAGTCAACAATAATGAAGCATCACCATCATTCCCGATTCTCAACTCATTCGATGAAATAACGGGCATGTATGATAATTTAACCGAGGAAGATTTTGCCATGATTAATGACATCTTGAATGAAGATGGAGAAGTGACCGGAGTTAATCAAAATCAAGTGATTCAAGTCGACAACAATGAAGCATCACTATCATCCTCAATTCTCAACTCATTCGATGAAATATCGAACATATATGATAATTTTACTGAGGAAGATTTTGTCATGATTAATGACTTCTTGAATGATGACGGAGAAGTAAACGGAGTTTCCTTTTAG 858 0.3392 MQPLSNSMHHMYNFNTTMPSSDYQIMQPLSNSMPYMYNFNTQMLYNEYYNNNNNNIREVQNQAESVSISGLDQAIQQEEQAQEQQQRRKVFHWTNEEHMLFLEGLQVCKKGKWKEISQKYVKTKTSTQIASHAQKYFKRQQQKLDVKSKDIKRKPRKSIHDKTIIMDIMPDTPTNQNQVIQQVNNNEASPSFPILNSFDEITGMYDNLTEEDFAMINDILNEDGEVTGVNQNQVIQVDNNEASLSSSILNSFDEISNIYDNFTEEDFVMINDFLNDDGEVNGVSF 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g02119 285 CDD SANT 93 137 IPR001005 -
Trre3g02119 285 Pfam Myb-like DNA-binding domain 93 137 IPR001005 -
Trre3g02119 285 NCBIfam myb-like DNA-binding domain, SHAQKYF class 91 140 IPR006447 GO:0003677
Trre3g02119 285 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 93 141 IPR017930 -
Trre3g02119 285 Gene3D - 91 142 - -
Trre3g02119 285 Coils Coil 68 88 - -
Trre3g02119 285 SMART sant 89 139 IPR001005 -
Trre3g02119 285 PANTHER TRANSCRIPTION FACTOR KUA1 59 227 - -
Trre3g02119 285 SUPERFAMILY Homeodomain-like 86 141 IPR009057 -
Trre3g02119 285 ProSiteProfiles SANT domain profile. 93 141 IPR017884 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g02119 Trre-Chr3 18859369 18860338 Dispersed/Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Trre3g02119 Myb_DNA-binding 6.5e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g02119 - - mtr:11423031 108.612