Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g02115 ATGCAACCTCTCTCAAATTCCATGCCATATATGTATAATTTCAACACACAAATGCCGTACAATGAATACTACAACAACAATAACAACAACATAAGGGAGGTACAAAACCAAGCAGAAAGTGTTTCAATTTCCGGTTTAGATCAAGCAATACAACAAGAAGAACAAGCACAAGAACAGCAACAAAGGAGGAAAGTGTTTCATTGGACAAATGAAGAACACATGCTTTTCTTGGAAGGTCTTCAAGTTTGCAAGAAAGGAAAGTGGAAAGAAATCTCTCAAAAATATGTAAAGACAAAGACTTCAACTCAAGTAGCAAGCCATGCTCAAAAGTATTTTAAAAGGCAACAACAAAAACTTGATGTTAAGAGCAAAGATATTAAAAGGAAACCTAGAAAAAGCATCCATGATAAGACGAATATTATGGATATTATGCCAGTTACTCCAACTAATCAAAATCAAGTGATTCAACAAGTCAACAATAATGAAGCATTACCACCATTCCCGATTCTCAACTCATTCGATGAAATAACGGGCATGTATGATAATTTTACCGAGGAAGATTTTGCCATGATTAATGACATCTTGAATGAAGATGGAGAAGTGACCGGAGTTAATCAAAATCAAGTGATTCAAGTCGACAACAATGAAGCATCACTATCATCCTCGATTCTCAACTCATTCGATGAAATATCGAACATATATGATAATTTTACTGAGGAAGATTTTGCCATGATTAATGACTTCTTGAATGAAGTTGGAGAAGTGACCGGAGTTTCCTTTTAG 783 0.3487 MQPLSNSMPYMYNFNTQMPYNEYYNNNNNNIREVQNQAESVSISGLDQAIQQEEQAQEQQQRRKVFHWTNEEHMLFLEGLQVCKKGKWKEISQKYVKTKTSTQVASHAQKYFKRQQQKLDVKSKDIKRKPRKSIHDKTNIMDIMPVTPTNQNQVIQQVNNNEALPPFPILNSFDEITGMYDNFTEEDFAMINDILNEDGEVTGVNQNQVIQVDNNEASLSSSILNSFDEISNIYDNFTEEDFAMINDFLNEVGEVTGVSF 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g02115 260 Pfam Myb-like DNA-binding domain 68 112 IPR001005 -
Trre3g02115 260 ProSiteProfiles SANT domain profile. 68 116 IPR017884 -
Trre3g02115 260 SMART sant 64 114 IPR001005 -
Trre3g02115 260 Coils Coil 43 63 - -
Trre3g02115 260 CDD SANT 68 112 IPR001005 -
Trre3g02115 260 NCBIfam myb-like DNA-binding domain, SHAQKYF class 66 115 IPR006447 GO:0003677
Trre3g02115 260 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 68 116 IPR017930 -
Trre3g02115 260 PANTHER TRANSCRIPTION FACTOR KUA1 39 200 - -
Trre3g02115 260 SUPERFAMILY Homeodomain-like 61 116 IPR009057 -
Trre3g02115 260 Gene3D - 66 117 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g02115 Trre-Chr3 18797311 18798205 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Trre3g02115 Myb_DNA-binding 6.2e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g02115 - - mtr:11423031 105.145