Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g02097 ATGCCGTACAATGAATACTACAACAACAATAACAACAACATAAGGGAGGTACAAAACCAAGCAGAACAAGCACAAGAACAACAGCAAAGGAGGAAAGTGTTTCATTGGACAAATGAAGAACACATGCTTTTCTTGGAAGGTCTTCAAGTTTGCAAGAAAGGAAAGTGGAAAGAAATCTCTCAAAAATATGTAAAGACAAAGACTTCAACTCAAGTAGCAAGCCATGCTCAAAAGTATTTTAAAAGGCAACAACAAAAACATGATGTTAAGAGCAAAGATATTAAAAGGAAACCTAGAAAAAGCATCCATGATAAGACGATTATTATGGATATTATGCCAGATACTCCAACTAATCAAAATCAAGTGATTCAACAAGTCAACAATAATGAACCATCACTATCATTCCCGATTCCGAACTCATTCGATGAAATAACGGGCATGTATGATAATTTTACCGAGGAAGATTTTCCCATGATTAACGACATCTTGAATGAAGATGGAGAAGTGACCGGAGTTAATCAAAATCAAGTGATTCAAGTCGACAACAATGAAGCATCACTATCATCCTCGATTCTCCACTCATTCGATGAAATATCAAACATATATAATAATTTTACTGAGGAAGATTTTGCCATGATTAATGACTTCTTGAATGAAGATGGAGAAGTGACCGGAGTTTCCTTTTAG 687 0.3508 MPYNEYYNNNNNNIREVQNQAEQAQEQQQRRKVFHWTNEEHMLFLEGLQVCKKGKWKEISQKYVKTKTSTQVASHAQKYFKRQQQKHDVKSKDIKRKPRKSIHDKTIIMDIMPDTPTNQNQVIQQVNNNEPSLSFPIPNSFDEITGMYDNFTEEDFPMINDILNEDGEVTGVNQNQVIQVDNNEASLSSSILHSFDEISNIYNNFTEEDFAMINDFLNEDGEVTGVSF 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g02097 228 SMART sant 32 82 IPR001005 -
Trre3g02097 228 Coils Coil 7 31 - -
Trre3g02097 228 ProSiteProfiles SANT domain profile. 36 84 IPR017884 -
Trre3g02097 228 CDD SANT 36 80 IPR001005 -
Trre3g02097 228 SUPERFAMILY Homeodomain-like 29 84 IPR009057 -
Trre3g02097 228 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 36 84 IPR017930 -
Trre3g02097 228 PANTHER TRANSCRIPTION FACTOR KUA1 20 172 - -
Trre3g02097 228 Pfam Myb-like DNA-binding domain 36 80 IPR001005 -
Trre3g02097 228 NCBIfam myb-like DNA-binding domain, SHAQKYF class 34 83 IPR006447 GO:0003677
Trre3g02097 228 Gene3D - 34 85 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g02097 Trre-Chr3 18605414 18606207 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Trre3g02097 Myb_DNA-binding 5e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g02097 - - mtr:11423031 107.457