Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g02096 ATGCAACCTCTCTCAAATTCCATGCCATATATGTATAATTTCAACACACAAATGCCGTACAATGAATACTACAACAACAATAACAACAACATAAGGGAGGTACAAAACCAAGCAGAACAAGCACAAGAACAACAGCAAAGGAGGAAAGTGTTTCATTGGACAAATGAAGAACACATGCTTTTCTTGGAAGGTCTTCAAGTTTGCAAGAAAGGAAAGTGGAAAGAAATCTCTCAAAAATATGTAAAGACAAAGACTTCAACTCAAGTAGCAAGCCATGCTCAAAAGTATTTTAAAAGGCAACAACAAAAACATGATGTTAAGAGCAAAGATATTAAAAGGAAACCTAGAAAAAGCATCCATGATAAGACGATTATTATGGATATTATGCCAGATACTCCAACTAATCAAAATCAAGTGATTCAACAAGTCAACAATAATGAACCATCACTATCATTCCCGATTCCGAACTCATTCGATGAAATAACGGGCATGTATGATAATTTTACCGAGGAAGATTTTCCCATGATTAACGACATCTTGAATGAAGATGGAGAAGTGACCGGAGTTAATCAAAATCAAGTGATTCAAGTCGACAACAATGAAGCATCACTATCATCCTCGATTCTCCACTCATTCGATGAAATATCAAACATATATAATAATTTTACTGAGGAAGATTTTGCCATGATTAATGACTTCTTGAATGAAGATGGAGAAGTGACCGGAGTTTCCTTTTAG 738 0.3496 MQPLSNSMPYMYNFNTQMPYNEYYNNNNNNIREVQNQAEQAQEQQQRRKVFHWTNEEHMLFLEGLQVCKKGKWKEISQKYVKTKTSTQVASHAQKYFKRQQQKHDVKSKDIKRKPRKSIHDKTIIMDIMPDTPTNQNQVIQQVNNNEPSLSFPIPNSFDEITGMYDNFTEEDFPMINDILNEDGEVTGVNQNQVIQVDNNEASLSSSILHSFDEISNIYNNFTEEDFAMINDFLNEDGEVTGVSF 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g02096 245 NCBIfam myb-like DNA-binding domain, SHAQKYF class 51 100 IPR006447 GO:0003677
Trre3g02096 245 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 53 101 IPR017930 -
Trre3g02096 245 PANTHER TRANSCRIPTION FACTOR KUA1 22 189 - -
Trre3g02096 245 Gene3D - 51 102 - -
Trre3g02096 245 Coils Coil 24 48 - -
Trre3g02096 245 Pfam Myb-like DNA-binding domain 53 97 IPR001005 -
Trre3g02096 245 ProSiteProfiles SANT domain profile. 53 101 IPR017884 -
Trre3g02096 245 SMART sant 49 99 IPR001005 -
Trre3g02096 245 CDD SANT 53 97 IPR001005 -
Trre3g02096 245 SUPERFAMILY Homeodomain-like 46 101 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g02096 Trre-Chr3 18605414 18606258 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Trre3g02096 Myb_DNA-binding 5.7e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g02096 - - mtr:11423031 107.457