Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g02076 ATGGAGATGAGCTGCCCATTAAATGTTAATAGCGACATTCCCGTGTGCTCTACTAGCACAGTTAATACTTCACACTCACACCAGAGTTTCTGTGGCTTTGTGCAACAGCCTTCTTTTGTGAGTGGATGGATGTATGTGAATGAACATGGACAAATGTGCGGTCCATATATTAAGGAGCAGTTATATGAGGGCCTAACTACAGGTTTCTTGCCGTTTGAGCTTCCTGTGTATCCTGTGATCAATGGCACAATAATGAACCCTGTACCATTGAATTATTTCAAACAGTTTCCTGACCATGTTTCCACCGGATTTACGTATCTGAGTATGGATTTATCAGACACAAGGATGTCTACAAATTGCTCGTCTTCTTCTCAGGATATGATGATATACGAGCAAGAAAGATCTTTTGAGCTTGCTGCTCTTATGCCTGTTAACCCCGATTCAAAGTCTGTTTCACAGTCACATGTCAATGACTACAATAAGGAATCCAATCACATGAATTTAAACTCCGAGGCATTCAGCAAGATAATTTCTTGTCAGATGTTGGGAGGAGAATGCTGTTGGCTTTATGAGGATAAAAAGGGTATGAAACATGGCCCACATTCCATTTCAGAACTGATTTCCTGGCACCACCATGGATATCTTGAAGATTCAACAGTAATCTCTCATTTTAACAATGAGTATGGAACCTTTGTGTTGCTGTCTGCTGTAAATGCATCGAAAGGAGATACATCTGGAACCATCTGTGGATCAGATTCCAAAAGCAACGGAGTTGGTGATGTGATGAACTTAATTTATGAAATATCTGAAGACATTTCTTCCCAATTGCACATGGGTATAATGAAAGCTTCCCGTAGAGTTATGCTAGATGGGATTATTGGCGACATCATTGCAGAATTTGTTGCTGAAAAGAAATGCAAGAAGCAAAAGCTTGAGTCTGCTGACCGAACTTATGAAACTTGCATGTTAGACAATAAAATGATGAATAAAGGTACTTCCATTCCAAGTGAGCACGAACCTTCCCATATTATGGACAGTCAGGCTTGTCATGAAATTTCCAAACTGTCTTCAACGAGTGTTAAGTTAGTTGGAAGCATTGAAAATTTCTGGTGGTCATATGCTGCTGTTCGTAAAGAACTTTTTGATCGTTGCTTGCAAGACGTGTGGAATAAAGTGTTTTCTGACACGGTAACAGACTACTTTTTGTCCTGGAGGAAGAGGAAACTTTGGTCTCATCCTAAGCTCCAGTCATCTGTTAATGAATCTAAAGATTATGTTGAAAAGATTAAATCAAAAGCTTTGGTTCTCAGGCCAGGTTCCTCTGTATGCAATGTTGATGCTAATATCCAGTCTGGAGTAATGGTGACAGAAAGAGATGGTCATCCTGAGTTATTTGTATCTCCTAACAACGTCAAAAATGAAAGTATAGCAGAAGGTCAAAGAGTTTCATGCAGTTATCCAAACTCTAAAGATTTGACATGCATTCTTCAAAGTGTGCAGAACGAGCTTCACTTCTCTGCAAAGGCATCTTTAGCTGATTATGTTCGAAGTGTTGTCGAAAAGGAAGCAAACCAATTAATTCCTTCCCTAGAGAAAGGCAAATTTAGTGAGGTTGATATTAGTGACTGCCGTATCTCAGAGATGCTTACTGGTAAAACATTTGTTAAAGAAATTCTAAATGATAAGTCCATCAATGCTGTGAAAAATGGAGACTCGATTTGTCTGCCATCATCTGGAGACCACATGTCTAATGTATTCTCAAAAGCATTTCAAGAATTGTGTGGACATTCAAATGACGTGGCTGATGAAGAGGAGATTGGTGACCTACCACCTGGATTCGAGAAGAACTCTCAAACAATATTCCCACACCGCAATTCAAAATTTCGACCTTCAAGATTAGTTGAATGTAATCCTAAGATTACAGAATATGTTGCAGCTGCATTGTGCAGACAGAAGCTGCATGTTGAAGTTCTAGAAGAGTGGAAGTTTTCAATTCTTGATTCTACAATTAAGCAAATTTTTATGTCATCATGTACCTTAAAGAAAAAAATTCAGTCTCGTGGTCATGAGAAGGGGAAGTCATTCAGTGCAAGCAAGGAGCATTTGAATGATGCTACTTCTGAACTGAGAAAAGTGAAGGAAGGAACAAAAAGTTCCAGAGTTCTGCTGGCGACTGGAAAGCATACATATCAGCGTAAGAAGCCGTCACGGAAAGAGTTATCCTCCTTTCAGCCAGTTGTTGAAGATAATTTAGGGCCAGGGAAGCAGGCTCTGGCTAAGTTAAGGAAACATGCTTCTGGAGATGTGAAGGAGAGTGCAGAAGTTAAAATAGCCACTATTAAACGTGGAACAGCTAAGATGATTAAAGGGAAGAAGGATACATCCTCTAAGAGCAGGTCTTCTGTCAATGTAGATAATAGCTCACACAGTGATCAATTATCCTTGAAGAATAAAACTAACCTGAAAGTTTTGAAGTTTGCACGTACAGTTCAAAACGGTGTTACAGATGTAGTGAAGTCTAATGGGAAGAAGCTATCAGTGTCAAAAGATAATAGTGTTGGTATGAAGGTGGTTAAAAGAAATAACTCTGATGGCACCATTCACAGGAAGACCAATGGTCATATCTCCCTAGAGAAACTAAATGCGACAAATAAAGTATCAAAATCAAAAAGAAAGCATCAAACAGATGATGTTACATCCTCACACCCTTCTAAGGTTTTGAAAATTTCAAATAGGGGTGCAAGTCTGGGAGCTAGCAAACAAGTAACTGAGGCACGGAGAAATTCTGCTGAATCCAAGTCATTGGATTTATGTCCTAGATCTAATGGATGTGCTAGGACTTCTATTAATGGGTGGGAATGGCGCAAGTGGTCTCAAAATGCTAGTCCTGCATGTAGAGCACGTGTGAGGGGTCTTCCGCGTTTACAAAACAAGCGCGTAGATTCTGAAAATAATTCATCCCAGTTATCAAATGGTAAGGGTCTTTCTGCAAGAACAAATAGGGTGAAATTGCGTAACCTTCTTGCTGCAGCTGAGGGTGCAGATCTTCTGAAAGTGCCTCAATTGAAGGCACGGAAAAAGCGATTACGTTTTCAAAGGAGTAAGATTCACGACTGGGGTCTTGTTGCCTTGGAGCCAATAGAAGCAGAGGACTTTGTGATTGAATATATTGGAGAATTAATTCGCTCTCGGATATCTGATATACGAGAGCTTCAATATGAGAAGATGGGAATTGGAAGCAGTTACCTTTTCAGACTTGATGATGGTTACGTGGTTGATGCTACAAAGAGAGGTGGGATTGCAAGATTTATTAACCATTCTTGTGAGCCCAACTGTTACACAAAGGTTATAGCTGTTGAGGGTGAAAAAAAGATTTTTATATATGCAAAACGGCATATAAAAGCTGGTGAAGAAATTACATACAATTATAAGTTTCCCTTGGAGGACAAAAAGATTCCCTGCAACTGTGGTTCCAAAAAGTGTCGTGGATCAATGAATTAG 3501 0.3953 MEMSCPLNVNSDIPVCSTSTVNTSHSHQSFCGFVQQPSFVSGWMYVNEHGQMCGPYIKEQLYEGLTTGFLPFELPVYPVINGTIMNPVPLNYFKQFPDHVSTGFTYLSMDLSDTRMSTNCSSSSQDMMIYEQERSFELAALMPVNPDSKSVSQSHVNDYNKESNHMNLNSEAFSKIISCQMLGGECCWLYEDKKGMKHGPHSISELISWHHHGYLEDSTVISHFNNEYGTFVLLSAVNASKGDTSGTICGSDSKSNGVGDVMNLIYEISEDISSQLHMGIMKASRRVMLDGIIGDIIAEFVAEKKCKKQKLESADRTYETCMLDNKMMNKGTSIPSEHEPSHIMDSQACHEISKLSSTSVKLVGSIENFWWSYAAVRKELFDRCLQDVWNKVFSDTVTDYFLSWRKRKLWSHPKLQSSVNESKDYVEKIKSKALVLRPGSSVCNVDANIQSGVMVTERDGHPELFVSPNNVKNESIAEGQRVSCSYPNSKDLTCILQSVQNELHFSAKASLADYVRSVVEKEANQLIPSLEKGKFSEVDISDCRISEMLTGKTFVKEILNDKSINAVKNGDSICLPSSGDHMSNVFSKAFQELCGHSNDVADEEEIGDLPPGFEKNSQTIFPHRNSKFRPSRLVECNPKITEYVAAALCRQKLHVEVLEEWKFSILDSTIKQIFMSSCTLKKKIQSRGHEKGKSFSASKEHLNDATSELRKVKEGTKSSRVLLATGKHTYQRKKPSRKELSSFQPVVEDNLGPGKQALAKLRKHASGDVKESAEVKIATIKRGTAKMIKGKKDTSSKSRSSVNVDNSSHSDQLSLKNKTNLKVLKFARTVQNGVTDVVKSNGKKLSVSKDNSVGMKVVKRNNSDGTIHRKTNGHISLEKLNATNKVSKSKRKHQTDDVTSSHPSKVLKISNRGASLGASKQVTEARRNSAESKSLDLCPRSNGCARTSINGWEWRKWSQNASPACRARVRGLPRLQNKRVDSENNSSQLSNGKGLSARTNRVKLRNLLAAAEGADLLKVPQLKARKKRLRFQRSKIHDWGLVALEPIEAEDFVIEYIGELIRSRISDIRELQYEKMGIGSSYLFRLDDGYVVDATKRGGIARFINHSCEPNCYTKVIAVEGEKKIFIYAKRHIKAGEEITYNYKFPLEDKKIPCNCGSKKCRGSMN 1166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g02076 1166 MobiDBLite consensus disorder prediction 900 925 - -
Trre3g02076 1166 SMART set_7 1027 1150 IPR001214 GO:0005515
Trre3g02076 1166 ProSiteProfiles Post-SET domain profile. 1150 1166 IPR003616 -
Trre3g02076 1166 MobiDBLite consensus disorder prediction 786 813 - -
Trre3g02076 1166 Gene3D SET domain 862 1166 IPR046341 -
Trre3g02076 1166 MobiDBLite consensus disorder prediction 882 936 - -
Trre3g02076 1166 SMART PostSET_3 1150 1166 IPR003616 -
Trre3g02076 1166 ProSiteProfiles GYF domain profile. 185 235 IPR003169 GO:0005515
Trre3g02076 1166 MobiDBLite consensus disorder prediction 978 995 - -
Trre3g02076 1166 CDD SET_SETD1 1015 1162 IPR037841 GO:0042800|GO:0048188
Trre3g02076 1166 ProSiteProfiles SET domain profile. 1027 1144 IPR001214 GO:0005515
Trre3g02076 1166 MobiDBLite consensus disorder prediction 799 813 - -
Trre3g02076 1166 MobiDBLite consensus disorder prediction 976 995 - -
Trre3g02076 1166 Pfam SET domain 1039 1143 IPR001214 GO:0005515
Trre3g02076 1166 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETD1 24 1166 IPR044570 GO:0042800|GO:0051568
Trre3g02076 1166 SUPERFAMILY GYF domain 183 237 IPR035445 -
Trre3g02076 1166 Gene3D - 178 251 IPR035445 -
Trre3g02076 1166 SUPERFAMILY SET domain 1023 1163 IPR046341 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g02076 Trre-Chr3 18326348 18338250 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g02076 1026 1166 C2H2 Transcription Factor Family AT2G23740 35.583 1.19e-17 87.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Trre3g02076 SET 4.5e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g02076 - - gmx:100805708 1561.97