Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g02056 ATGAATGATCAAAACAACTCTGAAGTTGCTGAAAAGGGTATAAATGATAAACCTGTTCGTGTTTATGCCGATGGAATTTACGATCTATTTCACTTTGGTCATGCTCGTTCTCTTGAACAAGCCAAGAAATCGTTTCCAAATACTTATCTCCTAGTTGGATGTTGCAATGATGAGACCACTCATAAGTATAAGGGTAAAACTGTTATGACTGAGGCGGAACGCTATGAGTCTCTTCGACACTGCAAGTGGGTTGATGAAGTTATTCCAGATGTGCCATGGGTAATCAATCAGGAGTTTATCGACAAGCATCAAATTGACTATGTAGCACATGATGCTCTTCCTTATGCCGATACAAGTGGAGCTGGAAGCGATGTCTATGAATTTGTTAAGGCTATTGGAAAATTTAAGGAAACAAAGCGGACCGAAGGAATTTCTACATCTGATATCATAATGAGAATCATCAAAGATTATAACCAGTATGTAATGCGTAATTTGGATCGTGGTTATTCAAGAAAGGAGCTAGGTGTTAGCTATGTCAAGGAGAAAAGATTAAGAATGAACATGGGACTTAAGAAATTGCAGGAGAGAGTGAAGAAACAACAAGAGACCGTGGGAAAGAAGATAGGAACAGTGAAAAAAATTGCTGGCATGAACCGTACTGAATGGGTTGAAAATGCTGATCGATTAGTTGCTGGATTTCTTGAGATGTTTGAAGAAGGATGCCACAAAATGGGAACGGCAATCAGAGACAGAATTCAAGAACAACTGAAGGCACAGCAGCTAAGATCTCTTCTATATGATGAGTGGGATGATGATGATGATGATGGTGATGACAAATTCTATGAGGATGAATCTGTCGAATTCTACAGCGACTAA 876 0.3904 MNDQNNSEVAEKGINDKPVRVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCNDETTHKYKGKTVMTEAERYESLRHCKWVDEVIPDVPWVINQEFIDKHQIDYVAHDALPYADTSGAGSDVYEFVKAIGKFKETKRTEGISTSDIIMRIIKDYNQYVMRNLDRGYSRKELGVSYVKEKRLRMNMGLKKLQERVKKQQETVGKKIGTVKKIAGMNRTEWVENADRLVAGFLEMFEEGCHKMGTAIRDRIQEQLKAQQLRSLLYDEWDDDDDDGDDKFYEDESVEFYSD 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g02056 291 Gene3D HUPs 2 239 IPR014729 -
Trre3g02056 291 PANTHER CYTIDYLYLTRANSFERASE 9 286 IPR045049 GO:0004105|GO:0006657
Trre3g02056 291 Pfam Cytidylyltransferase-like 22 151 IPR004821 GO:0003824|GO:0009058
Trre3g02056 291 SUPERFAMILY Nucleotidylyl transferase 20 152 - -
Trre3g02056 291 NCBIfam cytidyltransferase-like domain 20 87 IPR004821 GO:0003824|GO:0009058
Trre3g02056 291 CDD CCT 17 168 IPR041723 -
Trre3g02056 291 FunFam Choline-phosphate cytidylyltransferase 2 1 239 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g02056 Trre-Chr3 18212306 18215275 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g02056 45 283 Acyl Lipid Metabolism Gene Families AT2G32260 78.333 1.40e-135 383
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g02056 K00968 - gmx:100791886 492.271
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre3g02056 3 18212306 18215275 Trre3g02056 3 18212306 18215275 ECH