Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g02055 ATGTACCAAATTTACTCTCAAACTCCAACAATTAGTCCCACAATAAGCAAACCATGTAACAATCCTTCTACACAACATGGTCTAAATTCTATGGTTCTTGTAGCAGCAATTGTTTGTGCTTTACTTTGTGCTCTTGGCCTAAACACAATGTTACAATGTGTGTTCCAATGCGCGAACCGTGTCCTTACCGAACCTCTACAATGGATCGCTTCTCGAAGGCGCAATTCCGGACTCAAGAAGAAAGAAATGATTGCTTTGCCAACATCAATTTTTAATACTCATTCAGCTGAATCAACTCCTCCATCATTGGATTCTAGTTGTGCCATTTGCTTAGCTGAATTTTGTGATGGTGATAACATGAAGTTGCTACCAAAGTGTAATCATCGTTTTCATGTTGTTTGTATTGATATGTGGTTAATTTCTCATTCTTCTTGTCCTAATTGTAGGAAAATGATTAAGTCTAATGATTCTGTGCATTGCTTATAA 486 0.3704 MYQIYSQTPTISPTISKPCNNPSTQHGLNSMVLVAAIVCALLCALGLNTMLQCVFQCANRVLTEPLQWIASRRRNSGLKKKEMIALPTSIFNTHSAESTPPSLDSSCAICLAEFCDGDNMKLLPKCNHRFHVVCIDMWLISHSSCPNCRKMIKSNDSVHCL 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g02055 161 Pfam Ring finger domain 106 149 IPR001841 -
Trre3g02055 161 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 66 155 IPR013083 -
Trre3g02055 161 PANTHER RING-H2 FINGER PROTEIN ATL78 18 153 IPR044602 GO:0016567|GO:0016740
Trre3g02055 161 SUPERFAMILY RING/U-box 106 155 - -
Trre3g02055 161 ProSiteProfiles Zinc finger RING-type profile. 107 149 IPR001841 -
Trre3g02055 161 SMART ring_2 107 148 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g02055 Trre-Chr3 18205907 18206392 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g02055 1 152 C3H Transcription Factor Family AT1G20823 39.130 5.21e-31 109
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g02055 - - psat:127138077 276.944