Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g02045 ATGGATTCAGTCAATGTGATATCAACAAGTACAATCCAAGCACCAATAATTCACAACTCAACAACAACAACAACAAAAAATTCTCATCAAATAATCAATTTAACACCATGGGATCTCCAATTTCTCCCACTTGGTACCATTCAAAAAGGCCTTCTTTTCCACCAACCAATTCCCACACAAAACCAAATCAACCATCTCAAACAAACCCTTTCCACCACTCTCTCCTTTTTCCCACCCTTAACAGGTCGTCTCATAATCACACACCACACCACCACCTCACCAAACAACACATCATGTTCCATCATTTGTAACAACCTTGGTGTTCTCTTCATTCATGCCAAAGCAAACAACACTTCCATAACTAACATTCTTCAACCAAACAACAACTTCGTAGTACCTCCCATTGTTCACTCATTTTTCCCACTTAACGGCGTTAAAAACTACCAAGCTACTTCACAGTCACAACCAATTCTGGCTATCCAATTAACAGAGTTAACTAACGGTATCTTCATTGGTTTCACTCTTAACCACGTTGTTTCTGACGGTAAATCTTTTTGGCATTTCGTTAATTCTTGGTCACAAATCTCTAAAGGTTCTCACAAAATTACCAAAATGCCCTCGCTTCAACGTTGGTTCCCAAACAACATTGAAACTCCAATACTTTTCCCTTTCACAATAACAGAATCAAAAGATCAACAATGCTCGAAGCTTCCAGAAAGATTCTTCCATTTTACGAAAGCGAAACTAGAAGAATTGAAATCAAAAGCTAATGAAGAAGCCAACACGGACAAAACTAAAACAAATAGAATCTCTTCGCTTCAAGCGCTATTATCTCATGTTTGGCGTTCGGTTGTTCGATGCAAAAAACTCGATCCACAAGAAGATTTTCGGTATGTGTTGATAATAGGAGTTAGACCAAGGATGAATCCGCCACTTGACGAGGATTATTTTGGAAATGCTGCAATGGTTGGTGATGTGAGGATGAAAGTAGGGGAGGTTATGGAATGTGGGATTGGAAAAGTTGCTCTGGAGATGAATAAGATGATTGCATTACATTCTCATGAGAAAATAAAGAATGATTATGAGTGTTGGTTGAGAATGCCGAGGTTGTTTTCGATTGGTAATTTGACGAGTGGTAATTCATTGGCGACGAGTAGTTCTCCGAGGTTTGATGTTTATGGGGTTGATGAAGGTAGTATTGATGTTGAAGTTTGTCTTTCTTATGATATTTTGGAGGCTTTGGGAAATGACACTGAGTTTGTGGTTCCAATTTCTAAGTAA 1281 0.3849 MDSVNVISTSTIQAPIIHNSTTTTTKNSHQIINLTPWDLQFLPLGTIQKGLLFHQPIPTQNQINHLKQTLSTTLSFFPPLTGRLIITHHTTTSPNNTSCSIICNNLGVLFIHAKANNTSITNILQPNNNFVVPPIVHSFFPLNGVKNYQATSQSQPILAIQLTELTNGIFIGFTLNHVVSDGKSFWHFVNSWSQISKGSHKITKMPSLQRWFPNNIETPILFPFTITESKDQQCSKLPERFFHFTKAKLEELKSKANEEANTDKTKTNRISSLQALLSHVWRSVVRCKKLDPQEDFRYVLIIGVRPRMNPPLDEDYFGNAAMVGDVRMKVGEVMECGIGKVALEMNKMIALHSHEKIKNDYECWLRMPRLFSIGNLTSGNSLATSSSPRFDVYGVDEGSIDVEVCLSYDILEALGNDTEFVVPISK 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g02045 426 Gene3D - 2 219 IPR023213 -
Trre3g02045 426 Pfam Transferase family 26 399 - -
Trre3g02045 426 Gene3D - 220 424 IPR023213 -
Trre3g02045 426 PANTHER FAMILY REGULATORY PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_3G14730)-RELATED 20 396 - -
Trre3g02045 426 Coils Coil 246 266 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g02045 Trre-Chr3 18108275 18109639 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g02045 51 398 Monolignol Biosynthesis Gene Families AT5G48930 25.000 5.81e-19 86.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g02045 - - gmx:100500257 452.981