Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g02026 ATGTGTTCACCTGAGTCACATGCTACAAAGACTACACCAAATCTTGCAAAAAAAAGAAAACGTGAAGATACATGTGTGGTTGATGAAGAATATAGTTTAGGTGATGCGAAAGAATGCGGGGAGAATCAGTCACCATTTTTAAGTGTTGCGAAAAGTGCTATGCACGAAATATTACGTCTCCTGTCTAATACTGATAAATCCTTATGGAGAAACAATATAAATGAAGAAGTTGGATTTGTTCTTGATCAAAAAAGGTATATGAATTTGAATTCAATATTTTCAAAATTGATATCTTCCGATAGGCGTGAAGAGTCTTCGAAAGCAGAGCTGATAGTCCGGAGCAGCGGAAAAGATTTGGTCGAATTGATTTTAGATTCGGAAAAATGGGCAAAATTGTTTCCAACAATTGTTTCAAATGCTAGAACTGTGAAAGTATTTAATGTTGGTGCACATGGAAATCGAAATGGAGCCTTACAAGCGATGGTTGGAGAAATGCACATCCTTTCACCCTTGGTACCACCTCGAGAGTTCTACTTCATCCGTTATTGTCGACAATTTAGCGATAGGGATTGGGTGATAGTTGACGTGTCAGGTGATTTCCAATTTGAGCGCGCTAATGTTCGCAATCCGGCTTACAAACTTCCCTCTGGGTGTTTGATTCGTGAAATGCCTGATGGAAAATCTAAGGTTACTTGGGTTGAGCATGTGATGGTGAATGAAATGAGCCAAGAACTGATGCTATACAAAGATCTCATTTATGAGTATAATCCTTTTGGAGCAAAACTATGGCTTTACGCACTTCAAAGAATGTGTGAGAAAAAATATTTTTCTTCAATTGAATATTTTCCCAAACATGAAAATGATAGAGAGATTAAGTCAAAAGAAGGGAGAAAAAGTGTGATGAACCTTTCTAATCGGATGATTCAAAGCTTTTGCAAAGATTTGAACAGGGCAAAGATGAACAATATTTTGACAAATGACACAAATGAATATAAGATTCATTTAACTTCAGAGATTACTAACCCTAATGCGATTCGTTTGAAATGTCGCTCCAATTCAAATGGCATGGTTGTCACTGCAACGGGATCTGTTAGGCTTCATGTTCCTCCACAAACTATTTTTCACTTTCTTAGTGATGAAAAAAGACGACCAAAGTGGGATAGTCTTGTTGGTGAAAGAGAAGTGCATGAAGTTGCCTACATCTCAATAGGAGAAAGAGAAATTCAATCGTACAACCGCATTTCAATTCTTGAGATATATAATGACGATGATGGTGGTGATGATGATGAGGAGGAGGACGATAACAACAATAACAATGTGCAAATTTTTCAAGAAGTTTGTATTGATCCTATTGGAGCTTATGTTGTGTATGCTCCAATAGGTAAAAAAAATATGCATAAAATCTTAAATGAAGAAAACTCATCAGATTTTGGAATTCTACCCTGGGGTTTCATGATCTCAAGAGATGGACATTTTGAAGATGATAATGATGATACATCTGGAAGTGATCATCATAAACAAAAGGGATCATTGGTTACATTTTCTTTTCAAGTTTTAGTTCCTGCTGAAGCATCACTTGGAGTAACCATGGAATGTTTAAATTCAATATTCACCACAACAATTGAAAAGATTCAAAATGCTTTGGATTGTGAAGATGATGATTAA 1665 0.361 MCSPESHATKTTPNLAKKRKREDTCVVDEEYSLGDAKECGENQSPFLSVAKSAMHEILRLLSNTDKSLWRNNINEEVGFVLDQKRYMNLNSIFSKLISSDRREESSKAELIVRSSGKDLVELILDSEKWAKLFPTIVSNARTVKVFNVGAHGNRNGALQAMVGEMHILSPLVPPREFYFIRYCRQFSDRDWVIVDVSGDFQFERANVRNPAYKLPSGCLIREMPDGKSKVTWVEHVMVNEMSQELMLYKDLIYEYNPFGAKLWLYALQRMCEKKYFSSIEYFPKHENDREIKSKEGRKSVMNLSNRMIQSFCKDLNRAKMNNILTNDTNEYKIHLTSEITNPNAIRLKCRSNSNGMVVTATGSVRLHVPPQTIFHFLSDEKRRPKWDSLVGEREVHEVAYISIGEREIQSYNRISILEIYNDDDGGDDDEEEDDNNNNNVQIFQEVCIDPIGAYVVYAPIGKKNMHKILNEENSSDFGILPWGFMISRDGHFEDDNDDTSGSDHHKQKGSLVTFSFQVLVPAEASLGVTMECLNSIFTTTIEKIQNALDCEDDD 554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g02026 554 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 32 548 IPR042160 -
Trre3g02026 554 Gene3D - 288 399 IPR023393 -
Trre3g02026 554 Gene3D - 46 252 IPR023393 -
Trre3g02026 554 SUPERFAMILY Bet v1-like 295 398 - -
Trre3g02026 554 CDD START_ArGLABRA2_like 43 272 - -
Trre3g02026 554 Pfam START domain 102 273 IPR002913 GO:0008289
Trre3g02026 554 ProSiteProfiles START domain profile. 39 276 IPR002913 GO:0008289
Trre3g02026 554 SUPERFAMILY Bet v1-like 46 273 - -
Trre3g02026 554 SMART START_1 59 273 IPR002913 GO:0008289
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g02026 Trre-Chr3 17931945 17935137 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g02026 42 550 Homeobox Transcription Factor Family AT1G17920 33.716 4.15e-85 276
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g02026 K09338 - aprc:113852280 359.377