Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g02025 ATGGCTCATTTTCAGATGTGTTCACCTGAGTCACATGCTACAAAGACTACACCAAATCTTGCAAAAAAAAGAAAACGTGAAGATACATGTGTGGTTGATGAAGAATATAGTTTAGGTGATGCGAAAGAATGCGGGGAGAATCAGTCACCATTTTTAAGTGTTGCGAAAAGTGCTATGCACGAAATATTACGTCTCCTGTCTAATACTGATAAATCCTTATGGAGAAACAATATAAATGAAGAAGTTGGATTTGTTCTTGATCAAAAAAGGTATATGAATTTGAATTCAATATTTTCAAAATTGATATCTTCCGATAGGCGTGAAGAGTCTTCGAAAGCAGAGCTGATAGTCCGGAGCAGCGGAAAAGATTTGGTCGAATTGATTTTAGATTCGGAAAAATGGGCAAAATTGTTTCCAACAATTGTTTCAAATGCTAGAACTGTGAAAGTATTTAATGTTGGTGCACATGGAAATCGAAATGGAGCCTTACAAGCGATGGTTGGAGAAATGCACATCCTTTCACCCTTGGTACCACCTCGAGAGTTCTACTTCATCCGTTATTGTCGACAATTTAGCGATAGGGATTGGGTGATAGTTGACGTGTCAGGTGATTTCCAATTTGAGCGCGCTAATGTTCGCAATCCGGCTTACAAACTTCCCTCTGGGTGTTTGATTCGTGAAATGCCTGATGGAAAATCTAAGGTTACTTGGGTTGAGCATGTGATGGTGAATGAAATGAGCCAAGAACTGATGCTATACAAAGATCTCATTTATGAGTATAATCCTTTTGGAGCAAAACTATGGCTTTACGCACTTCAAAGAATGTGTGAGAAAAAATATTTTTCTTCAATTGAATATTTTCCCAAACATGAAAATGATAGAGAGATTAAGTCAAAAGAAGGGAGAAAAAGTGTGATGAACCTTTCTAATCGGATGATTCAAAGCTTTTGCAAAGATTTGAACAGGGCAAAGATGAACAATATTTTGACAAATGACACAAATGAATATAAGATTCATTTAACTTCAGAGATTACTAACCCTAATGCGATTCGTTTGAAATGTCGCTCCAATTCAAATGGCATGGTTGTCACTGCAACGGGATCTGTTAGGCTTCATGTTCCTCCACAAACTATTTTTCACTTTCTTAGTGATGAAAAAAGACGACCAAAGTGGGATAGTCTTGTTGGTGAAAGAGAAGTGCATGAAGTTGCCTACATCTCAATAGGAGAAAGAGAAATTCAATCGTACAACCGCATTTCAATTCTTGAGATATATAATGACGATGATGGTGGTGATGATGATGAGGAGGAGGACGATAACAACAATAACAATGTGCAAATTTTTCAAGAAGTTTGTATTGATCCTATTGGAGCTTATGTTGTGTATGCTCCAATAGGTAAAAAAAATATGCATAAAATCTTAAATGAAGAAAACTCATCAGATTTTGGAATTCTACCCTGGGGTTTCATGATCTCAAGAGATGGACATTTTGAAGATGATAATGATGATACATCTGGAAGTGATCATCATAAACAAAAGGGATCATTGGTTACATTTTCTTTTCAAGTTTTAGTTCCTGCTGAAGCATCACTTGGAGTAACCATGGAATGTTTAAATTCAATATTCACCACAACAATTGAAAAGATTCAAAATGCTTTGGATTGTGAAGATGATGATTAA 1680 0.3613 MAHFQMCSPESHATKTTPNLAKKRKREDTCVVDEEYSLGDAKECGENQSPFLSVAKSAMHEILRLLSNTDKSLWRNNINEEVGFVLDQKRYMNLNSIFSKLISSDRREESSKAELIVRSSGKDLVELILDSEKWAKLFPTIVSNARTVKVFNVGAHGNRNGALQAMVGEMHILSPLVPPREFYFIRYCRQFSDRDWVIVDVSGDFQFERANVRNPAYKLPSGCLIREMPDGKSKVTWVEHVMVNEMSQELMLYKDLIYEYNPFGAKLWLYALQRMCEKKYFSSIEYFPKHENDREIKSKEGRKSVMNLSNRMIQSFCKDLNRAKMNNILTNDTNEYKIHLTSEITNPNAIRLKCRSNSNGMVVTATGSVRLHVPPQTIFHFLSDEKRRPKWDSLVGEREVHEVAYISIGEREIQSYNRISILEIYNDDDGGDDDEEEDDNNNNNVQIFQEVCIDPIGAYVVYAPIGKKNMHKILNEENSSDFGILPWGFMISRDGHFEDDNDDTSGSDHHKQKGSLVTFSFQVLVPAEASLGVTMECLNSIFTTTIEKIQNALDCEDDD 559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g02025 559 ProSiteProfiles START domain profile. 44 281 IPR002913 GO:0008289
Trre3g02025 559 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 31 553 IPR042160 -
Trre3g02025 559 SMART START_1 64 278 IPR002913 GO:0008289
Trre3g02025 559 Pfam START domain 107 278 IPR002913 GO:0008289
Trre3g02025 559 CDD START_ArGLABRA2_like 48 277 - -
Trre3g02025 559 SUPERFAMILY Bet v1-like 51 278 - -
Trre3g02025 559 Gene3D - 293 404 IPR023393 -
Trre3g02025 559 Gene3D - 51 257 IPR023393 -
Trre3g02025 559 MobiDBLite consensus disorder prediction 1 24 - -
Trre3g02025 559 SUPERFAMILY Bet v1-like 300 403 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g02025 Trre-Chr3 17931945 17935152 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g02025 47 555 Homeobox Transcription Factor Family AT1G17920 33.716 5.28e-85 276
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g02025 K09338 - aprc:113852280 359.762