Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g02023 ATGGATGGTTCAAAGAAAGACAAACAACCCTACAAGTTCACCCGGTATCAAGAAACAAAACTACTAAGATTTTTGAAGAGTTGTCCACATCCAAATGAAGCTCAATATCAAGGATATGCCAAGGAGTTTGGAATCGAGCCTGAGCAAATTAAATATTGGTTTCATAAGAGAACTCAATCAAAGACGTGTCCACCTGAGTCACACGCTACAAAGACTACACCAAATCTTGCAAAAAAAAGAAAACGCGAAGATACATGTGTGGTTGATGAAGAATATAGTTTAGGTGATGCGATAGAATCCGAGGAAAACCAGTCACCATTTTTAAGTGTTGCGAAAAATGCTATGCGCGAAATATTACGACTTGTGTCTATTACTGATAAATCCTTATGGAGAAACAATATAAATGAAGAAGTTGGATTTATTCTTGATCGAAAAAGGTATATGAATTTGAATTCAATATTTTCAAAATTGATATCTTCCGATAGGCGTGAAGAGTCTTCGAAAACAGAGCTGATAGTCCGGAGCAGCGGAAAACATTTGGTCGAATTGATTTTAGATTCGGAAAAATGGGCAAAATTGTTTCCAACAATTGTTTCAAATGCTAGAACTGTGAAAGTATTTAATGCTGGTGCACCTGGAAATCGAAATGGAGCCTTACAAGCGATGGTTGGAGAAGTGCACATCCTTTCAGCCTTGGTACCACCTCGAGAGTTCTACTTCATCTGTTATTGTCGACAATTTAGCGATAGGGATTGGGTGATAGTTGACGTGTCAGGTGATTTCCTATTCGAGCGCGCTAATGTTCGTAATCCGGCTTACAAACTTCCCTCTGGGTGTTTGATTCGTGAAATGCCTGATGGAAAATCTAAGGTTACTTGGGTTGAGCATGTGATGGTGAATGAGATGAGCCAAGAACTGATGCTATACAAAGATCTCATTTATAAGTATAATCCTTTTGGAGCAAAACTATGGCTTTACGCACTTCAAAGAATGTGTGAGAAAAATTACTTTTCTTCAATTGAGTATTTTCCCAAACATGATAATGATAGAGAGATTAGGTCAAAGGAAGTGAGAAAAAGTGTGGTGAACCTTTCCAATCGAATGATTCAAAGCTTTTGCAAAGATATGAACAGGGCAAAGATGAACCATATTTTGACACATGAAACAAATGAATATAAGATTCATTTAACTTCAGAAATTACTAACCCTAATGCAATTCGTTTGAAATGTCGCTCCAATTCAAATGGCATGGTTGTCACTGCAACGGGATCTGTTAGGCTTCATGTTCCTCCACAAACTATTTTTCACTTTCTTAGTGATGAAAGAAGACGGCAAGAGTGGGACAGTCTTGTTGGTGAAAGAGAAGTGCATGAAGTGGCCTACATCTCAATAGGAGGAAGAGAAATTCAATCTTACAACCGCATTTCAATTCTTGAGGAGGAGGAGGAGGAGGAGGACGACGACGATAACAACAACAATGTGCAAATTTTTCAAGAAGTTTGTATTGATCCTGTGGGAGCTTATGTTGTGTATACTCCGGTAAGTACAAGAAATATGCACAAGATCTTAAATGAAGAGAATTCGTCAGATTTTGGAATTCTTCCTTGGGGTTTTATGATCTCAAAAGATGGACATGTTGATGTTGATGTTACATCTGAAAGTGACCATCATAGAAATACGGGATCATTAGTAACATTTTCTTTCCAAGTTTTAGTTCCTGCTGAAGCACCACTAGGAGTAACAATGGAACGGTTAAATTCAATATTCACCACAACAATTGAAAAGATTGAGAATGCTTTGGATTGTGAACATGATGATTAA 1821 0.3762 MDGSKKDKQPYKFTRYQETKLLRFLKSCPHPNEAQYQGYAKEFGIEPEQIKYWFHKRTQSKTCPPESHATKTTPNLAKKRKREDTCVVDEEYSLGDAIESEENQSPFLSVAKNAMREILRLVSITDKSLWRNNINEEVGFILDRKRYMNLNSIFSKLISSDRREESSKTELIVRSSGKHLVELILDSEKWAKLFPTIVSNARTVKVFNAGAPGNRNGALQAMVGEVHILSALVPPREFYFICYCRQFSDRDWVIVDVSGDFLFERANVRNPAYKLPSGCLIREMPDGKSKVTWVEHVMVNEMSQELMLYKDLIYKYNPFGAKLWLYALQRMCEKNYFSSIEYFPKHDNDREIRSKEVRKSVVNLSNRMIQSFCKDMNRAKMNHILTHETNEYKIHLTSEITNPNAIRLKCRSNSNGMVVTATGSVRLHVPPQTIFHFLSDERRRQEWDSLVGEREVHEVAYISIGGREIQSYNRISILEEEEEEEDDDDNNNNVQIFQEVCIDPVGAYVVYTPVSTRNMHKILNEENSSDFGILPWGFMISKDGHVDVDVTSESDHHRNTGSLVTFSFQVLVPAEAPLGVTMERLNSIFTTTIEKIENALDCEHDD 606
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g02023 606 Pfam START domain 173 334 IPR002913 GO:0008289
Trre3g02023 606 SUPERFAMILY Homeodomain-like 5 57 IPR009057 -
Trre3g02023 606 Gene3D - 346 460 IPR023393 -
Trre3g02023 606 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 95 600 IPR042160 -
Trre3g02023 606 SUPERFAMILY Bet v1-like 357 459 - -
Trre3g02023 606 CDD homeodomain 11 57 IPR001356 GO:0003677
Trre3g02023 606 Pfam Homeodomain 12 57 IPR001356 GO:0003677
Trre3g02023 606 Gene3D - 8 61 - -
Trre3g02023 606 SMART START_1 120 334 IPR002913 GO:0008289
Trre3g02023 606 ProSiteProfiles START domain profile. 100 337 IPR002913 GO:0008289
Trre3g02023 606 SMART HOX_1 6 67 IPR001356 GO:0003677
Trre3g02023 606 ProSiteProfiles 'Homeobox' domain profile. 4 57 IPR001356 GO:0003677
Trre3g02023 606 Gene3D - 107 317 IPR023393 -
Trre3g02023 606 SUPERFAMILY Bet v1-like 106 334 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g02023 Trre-Chr3 17817430 17822380 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g02023 6 62 Homeobox Transcription Factor Family AT4G04890 39.655 1.74e-07 52.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Trre3g02023 START 6.1e-23 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g02023 K09338 - aprc:113852280 392.119